Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e05
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff...    31   0.68 
At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At5g07300.1 68418.m00834 copine, putative strong similarity to B...    29   2.7  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    29   3.6  
At4g29200.1 68417.m04177 hypothetical protein                          27   8.4  

>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
           effector-related similar to Endonuclease sen1
           (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
           to tRNA-splicing endonuclease positive effector
           (Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
          Length = 1090

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 127 SESNSPSVLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQ 297
           +ESN  S    L + R   +  E S  G   ++    S  QP  IR P   H+  R+
Sbjct: 154 TESNGESYSGLLGKPRRLNRDEEPSAEGMGTSVSRQASWKQPANIRQPKSGHSSSRK 210


>At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 157 YLRQYRFQRKPNES-SGSGNQVTIKASTSSSQPQIIRMPAPNHTGQR 294
           ++R  R + +P +  SGSG+  +  + +SSS+P+  ++   N TG+R
Sbjct: 177 FVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRR 223


>At5g07300.1 68418.m00834 copine, putative strong similarity to
           BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
           Pfam profile PF00168: C2 domain
          Length = 586

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 436 EMFPDISPLLVKNKLVKHGWNEERSRDELLKYDP 537
           + F    P LV +K+V+HG     S+ E+LK DP
Sbjct: 209 DTFSKSDPFLVISKIVEHGTPIPVSKTEVLKNDP 242


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -2

Query: 276 WSWHPYYLWLRTR-CRSLNCNLVTGA*GFIWFSLKPVLS*IT*HTRAVTFRHFYIINGIY 100
           W  +    WL T    +L+ NL   A    W S+ P L+ I   + A  F  + I NG+ 
Sbjct: 331 WGHYTCLSWLPTYFSEALSLNLTEAA----WVSILPPLASIVVTSLASQFADYLITNGVD 386

Query: 99  TTLSFNLTQELFY 61
           TT    + Q + +
Sbjct: 387 TTTVRKICQTIAF 399


>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 375 FLCWRCWIVRIGIW*PDPLVDHNRIVLTLASVVWSW 268
           F+C  CWI+++       L D+  IVL + ++++ W
Sbjct: 331 FVCLLCWILKL------TLTDYRTIVLRILAILFPW 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,355
Number of Sequences: 28952
Number of extensions: 244903
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)