BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e05 (661 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 31 0.68 At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa... 29 2.7 At5g07300.1 68418.m00834 copine, putative strong similarity to B... 29 2.7 At5g20380.1 68418.m02424 transporter-related low similarity to v... 29 3.6 At4g29200.1 68417.m04177 hypothetical protein 27 8.4 >At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive effector-related similar to Endonuclease sen1 (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar to tRNA-splicing endonuclease positive effector (Swiss-Prot:Q00416) [Saccharomyces cerevisiae] Length = 1090 Score = 31.1 bits (67), Expect = 0.68 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 127 SESNSPSVLSYLRQYRFQRKPNESSGSGNQVTIKASTSSSQPQIIRMPAPNHTGQRQ 297 +ESN S L + R + E S G ++ S QP IR P H+ R+ Sbjct: 154 TESNGESYSGLLGKPRRLNRDEEPSAEGMGTSVSRQASWKQPANIRQPKSGHSSSRK 210 >At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 255 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +1 Query: 157 YLRQYRFQRKPNES-SGSGNQVTIKASTSSSQPQIIRMPAPNHTGQR 294 ++R R + +P + SGSG+ + + +SSS+P+ ++ N TG+R Sbjct: 177 FVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRR 223 >At5g07300.1 68418.m00834 copine, putative strong similarity to BONZAI1 [Arabidopsis thaliana] GI:15487382; contains Pfam profile PF00168: C2 domain Length = 586 Score = 29.1 bits (62), Expect = 2.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 436 EMFPDISPLLVKNKLVKHGWNEERSRDELLKYDP 537 + F P LV +K+V+HG S+ E+LK DP Sbjct: 209 DTFSKSDPFLVISKIVEHGTPIPVSKTEVLKNDP 242 >At5g20380.1 68418.m02424 transporter-related low similarity to vesicular glutamate transporter 3 [Rattus norvegicus] GI:21685382 Length = 517 Score = 28.7 bits (61), Expect = 3.6 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = -2 Query: 276 WSWHPYYLWLRTR-CRSLNCNLVTGA*GFIWFSLKPVLS*IT*HTRAVTFRHFYIINGIY 100 W + WL T +L+ NL A W S+ P L+ I + A F + I NG+ Sbjct: 331 WGHYTCLSWLPTYFSEALSLNLTEAA----WVSILPPLASIVVTSLASQFADYLITNGVD 386 Query: 99 TTLSFNLTQELFY 61 TT + Q + + Sbjct: 387 TTTVRKICQTIAF 399 >At4g29200.1 68417.m04177 hypothetical protein Length = 457 Score = 27.5 bits (58), Expect = 8.4 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 375 FLCWRCWIVRIGIW*PDPLVDHNRIVLTLASVVWSW 268 F+C CWI+++ L D+ IVL + ++++ W Sbjct: 331 FVCLLCWILKL------TLTDYRTIVLRILAILFPW 360 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,893,355 Number of Sequences: 28952 Number of extensions: 244903 Number of successful extensions: 614 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 614 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1383534864 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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