BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12e02 (430 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 192 1e-50 SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 66 2e-12 SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 2e-04 SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 37 0.002 SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.003 SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.006 SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.006 SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 33 0.019 SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.019 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.076 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.18 SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.18 SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.23 SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.31 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.31 SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.31 SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.40 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 0.53 SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 0.53 SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 0.93 SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 0.93 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.6 SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 1.6 SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 3.8 SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 3.8 SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 5.0 SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 6.6 SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.6 >SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 107 Score = 192 bits (469), Expect = 1e-50 Identities = 77/88 (87%), Positives = 81/88 (92%) Frame = +1 Query: 40 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 219 RFE+KKWNAVALW WDIVVDNCAICRNHIMDLCIECQAN SA ++ECTVAWG CNHAFH Sbjct: 20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFH 79 Query: 220 FHCISRWLKTRQVCPLDNREWEFQKYGH 303 FHCISRWL TR VCPLDNREWEFQ+YGH Sbjct: 80 FHCISRWLNTRNVCPLDNREWEFQRYGH 107 >SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schizosaccharomyces pombe|chr 1|||Manual Length = 94 Score = 66.1 bits (154), Expect = 2e-12 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Frame = +1 Query: 40 RFEVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 216 + ++ +++A+A W WD D+ C ICR C +C ++ + C + WG C H F Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56 Query: 217 HFHCISRWLKT---RQVCPLDNR 276 H HCI WL T + CP+D + Sbjct: 57 HAHCIQNWLATSGSQGQCPMDRQ 79 >SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 677 Score = 39.9 bits (89), Expect = 2e-04 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPLDNR 276 C H HFHC+ WL+ +Q CP+ R Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352 >SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 571 Score = 36.7 bits (81), Expect = 0.002 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +1 Query: 163 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 282 S+T + +A C H FH HC+ W + CPL E+ Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEF 82 >SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 35.9 bits (79), Expect = 0.003 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPL 267 C+H +H C+ +W++TR +CP+ Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668 >SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 583 Score = 34.7 bits (76), Expect = 0.006 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 267 C+ C +N ++EC CNH FH CI +WL + Q CPL Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566 >SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 34.7 bits (76), Expect = 0.006 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 130 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREW 282 D CI C A+ A + + C H FH CI W+ T + CPL N ++ Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250 >SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pombe|chr 2|||Manual Length = 741 Score = 33.1 bits (72), Expect = 0.019 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +1 Query: 109 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 285 + + +MDL C C + ++ T C H F +C+ +WL+ CPL +E Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPLCRKEVP 154 Query: 286 FQKYG 300 + G Sbjct: 155 HETVG 159 >SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 33.1 bits (72), Expect = 0.019 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 139 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNRE 279 +EC S T + VA C H FH CI++W+ R CP N E Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCNTE 365 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 31.1 bits (67), Expect = 0.076 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = +1 Query: 196 GVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 288 G C H FH C+ +W K+ CPL + F Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 29.9 bits (64), Expect = 0.18 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%) Frame = +1 Query: 169 TSEECTVAW--GVCNHAFHFHCISRWLK 246 T T W G C H FH CI +W K Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230 >SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 821 Score = 29.9 bits (64), Expect = 0.18 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Frame = +1 Query: 202 CNHAFHFHCISRWLKT-RQVCPL 267 C H FH CI +WL T CPL Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807 >SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 29.5 bits (63), Expect = 0.23 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPL 267 C H FH +CI WL+ C + Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435 >SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 29.1 bits (62), Expect = 0.31 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = +1 Query: 202 CNH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 300 C H F + CI RW+ CP+ R + YG Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 29.1 bits (62), Expect = 0.31 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCP 264 C H + + C+ WLK + CP Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120 >SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 29.1 bits (62), Expect = 0.31 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPLDNREWE 285 C H H S W T +CP+ N + E Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901 >SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 547 Score = 28.7 bits (61), Expect = 0.40 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +1 Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 240 C+ C S+ + T+ VC H FH C+ +W Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 28.3 bits (60), Expect = 0.53 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +1 Query: 199 VCNHAFHFHCISRWLKTRQ-VCPLDNR 276 +C H F + CI + ++TRQ CP+ R Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668 >SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 306 Score = 28.3 bits (60), Expect = 0.53 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPL 267 C H F + CI+ W + CPL Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292 >SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 27.5 bits (58), Expect = 0.93 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = +2 Query: 149 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVH*TIENGSSKSMVIKCHLEELH 328 ++I P P+++ + + +V H I + ++D + NG+ KS ++K +E+LH Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569 Query: 329 P 331 P Sbjct: 570 P 570 >SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 668 Score = 27.5 bits (58), Expect = 0.93 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 291 KVWSLNVI*KSCILHRSLTSSEHRELTCQYL 383 +VW L + + CI R S E+ E TC L Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 26.6 bits (56), Expect = 1.6 Identities = 8/22 (36%), Positives = 11/22 (50%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCPL 267 C H + C+ WLK CP+ Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128 >SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 26.6 bits (56), Expect = 1.6 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = +1 Query: 202 CNHAFHFHCISRW-LKTRQVCPL 267 C+H FH CI + LK +CPL Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539 >SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1894 Score = 25.4 bits (53), Expect = 3.8 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +2 Query: 83 GILLSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPVG 241 G + + +L A I WI V K +PL+K +L +F I++ TVF G Sbjct: 534 GAVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVFG 585 >SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 782 Score = 25.4 bits (53), Expect = 3.8 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Frame = -1 Query: 298 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 215 H G P L+ +D+ +E KY GNG Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780 >SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1822 Score = 25.0 bits (52), Expect = 5.0 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +1 Query: 28 GDKKRFEVKKWNAVA 72 G+ RFEVK WN VA Sbjct: 1538 GNAYRFEVKDWNLVA 1552 >SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 24.6 bits (51), Expect = 6.6 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCP 264 C+H F CI +L+ +CP Sbjct: 44 CSHTFCSFCIRDYLREHPMCP 64 >SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 425 Score = 24.6 bits (51), Expect = 6.6 Identities = 7/21 (33%), Positives = 11/21 (52%) Frame = +1 Query: 202 CNHAFHFHCISRWLKTRQVCP 264 C+H H C +++T CP Sbjct: 290 CSHPLHQRCHEEYIRTNYRCP 310 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,986,088 Number of Sequences: 5004 Number of extensions: 44356 Number of successful extensions: 138 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 154448264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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