Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e02
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 192 1e-50
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 66 2e-12
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 2e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 37 0.002
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.003
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.006
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 35 0.006
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 33 0.019
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.019
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.076
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.18
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.18
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.23
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.31
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.31
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 29 0.31
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.40
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 0.53
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 0.53
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 0.93
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 0.93
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.6
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 1.6
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 3.8
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 3.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 5.0
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 6.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.6
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 192 bits (469), Expect = 1e-50
Identities = 77/88 (87%), Positives = 81/88 (92%)
Frame = +1
Query: 40 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 219
RFE+KKWNAVALW WDIVVDNCAICRNHIMDLCIECQAN SA ++ECTVAWG CNHAFH
Sbjct: 20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFH 79
Query: 220 FHCISRWLKTRQVCPLDNREWEFQKYGH 303
FHCISRWL TR VCPLDNREWEFQ+YGH
Sbjct: 80 FHCISRWLNTRNVCPLDNREWEFQRYGH 107
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 66.1 bits (154), Expect = 2e-12
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +1
Query: 40 RFEVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 216
+ ++ +++A+A W WD D+ C ICR C +C ++ + C + WG C H F
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56
Query: 217 HFHCISRWLKT---RQVCPLDNR 276
H HCI WL T + CP+D +
Sbjct: 57 HAHCIQNWLATSGSQGQCPMDRQ 79
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.9 bits (89), Expect = 2e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNR 276
C H HFHC+ WL+ +Q CP+ R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 163 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 282
S+T + +A C H FH HC+ W + CPL E+
Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEF 82
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.003
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C+H +H C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 34.7 bits (76), Expect = 0.006
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 267
C+ C +N ++EC CNH FH CI +WL + Q CPL
Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.006
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREW 282
D CI C A+ A + + C H FH CI W+ T + CPL N ++
Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 33.1 bits (72), Expect = 0.019
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 109 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 285
+ + +MDL C C + ++ T C H F +C+ +WL+ CPL +E
Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
Query: 286 FQKYG 300
+ G
Sbjct: 155 HETVG 159
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 33.1 bits (72), Expect = 0.019
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 139 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNRE 279
+EC S T + VA C H FH CI++W+ R CP N E
Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 31.1 bits (67), Expect = 0.076
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 196 GVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 288
G C H FH C+ +W K+ CPL + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.18
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +1
Query: 169 TSEECTVAW--GVCNHAFHFHCISRWLK 246
T T W G C H FH CI +W K
Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.18
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKT-RQVCPL 267
C H FH CI +WL T CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.23
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C H FH +CI WL+ C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.31
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 202 CNH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 300
C H F + CI RW+ CP+ R + YG
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.31
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCP 264
C H + + C+ WLK + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.31
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNREWE 285
C H H S W T +CP+ N + E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.40
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 240
C+ C S+ + T+ VC H FH C+ +W
Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 28.3 bits (60), Expect = 0.53
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 199 VCNHAFHFHCISRWLKTRQ-VCPLDNR 276
+C H F + CI + ++TRQ CP+ R
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.3 bits (60), Expect = 0.53
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C H F + CI+ W + CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 0.93
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 149 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVH*TIENGSSKSMVIKCHLEELH 328
++I P P+++ + + +V H I + ++D + NG+ KS ++K +E+LH
Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569
Query: 329 P 331
P
Sbjct: 570 P 570
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 27.5 bits (58), Expect = 0.93
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 291 KVWSLNVI*KSCILHRSLTSSEHRELTCQYL 383
+VW L + + CI R S E+ E TC L
Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 1.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C H + C+ WLK CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 202 CNHAFHFHCISRW-LKTRQVCPL 267
C+H FH CI + LK +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 83 GILLSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPVG 241
G + + +L A I WI V K +PL+K +L +F I++ TVF G
Sbjct: 534 GAVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVFG 585
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 298 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 215
H G P L+ +D+ +E KY GNG
Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 28 GDKKRFEVKKWNAVA 72
G+ RFEVK WN VA
Sbjct: 1538 GNAYRFEVKDWNLVA 1552
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 6.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCP 264
C+H F CI +L+ +CP
Sbjct: 44 CSHTFCSFCIRDYLREHPMCP 64
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 6.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCP 264
C+H H C +++T CP
Sbjct: 290 CSHPLHQRCHEEYIRTNYRCP 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,088
Number of Sequences: 5004
Number of extensions: 44356
Number of successful extensions: 138
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -