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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e02
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...   192   1e-50
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    66   2e-12
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    40   2e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    37   0.002
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    36   0.003
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    35   0.006
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    35   0.006
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    33   0.019
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    33   0.019
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    31   0.076
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    30   0.18 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.18 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.23 
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.31 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.31 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    29   0.31 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.40 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    28   0.53 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    28   0.53 
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   0.93 
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   0.93 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   1.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   1.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   3.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   3.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   5.0  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   6.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.6  

>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score =  192 bits (469), Expect = 1e-50
 Identities = 77/88 (87%), Positives = 81/88 (92%)
 Frame = +1

Query: 40  RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 219
           RFE+KKWNAVALW WDIVVDNCAICRNHIMDLCIECQAN  SA ++ECTVAWG CNHAFH
Sbjct: 20  RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFH 79

Query: 220 FHCISRWLKTRQVCPLDNREWEFQKYGH 303
           FHCISRWL TR VCPLDNREWEFQ+YGH
Sbjct: 80  FHCISRWLNTRNVCPLDNREWEFQRYGH 107


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +1

Query: 40  RFEVKKWNAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 216
           + ++ +++A+A W WD   D+ C ICR      C +C     ++  + C + WG C H F
Sbjct: 2   KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56

Query: 217 HFHCISRWLKT---RQVCPLDNR 276
           H HCI  WL T   +  CP+D +
Sbjct: 57  HAHCIQNWLATSGSQGQCPMDRQ 79


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCPLDNR 276
           C H  HFHC+  WL+ +Q CP+  R
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRR 352


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 163 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 282
           S+T +   +A   C H FH HC+  W +    CPL   E+
Sbjct: 43  SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEF 82


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
           C+H +H  C+ +W++TR +CP+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 267
           C+ C +N     ++EC      CNH FH  CI +WL + Q  CPL
Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 130 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLDNREW 282
           D CI C A+ A     +  +    C H FH  CI  W+ T +  CPL N ++
Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 285
           +  + +MDL C  C  +      ++ T     C H F  +C+ +WL+    CPL  +E  
Sbjct: 97  LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPLCRKEVP 154

Query: 286 FQKYG 300
            +  G
Sbjct: 155 HETVG 159


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNRE 279
           +EC     S T  +  VA   C H FH  CI++W+   R  CP  N E
Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCNTE 365


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 31.1 bits (67), Expect = 0.076
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 196  GVCNHAFHFHCISRWLKTRQV--CPLDNREWEF 288
            G C H FH  C+ +W K+     CPL    + F
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +1

Query: 169 TSEECTVAW--GVCNHAFHFHCISRWLK 246
           T    T  W  G C H FH  CI +W K
Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKT-RQVCPL 267
           C H FH  CI +WL T    CPL
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
           C H FH +CI  WL+    C +
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 202 CNH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 300
           C H  F + CI RW+     CP+  R  +   YG
Sbjct: 37  CGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCP 264
           C H + + C+  WLK  + CP
Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCPLDNREWE 285
           C H  H    S W  T  +CP+ N + E
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 136 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 240
           C+ C     S+ +   T+   VC H FH  C+ +W
Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 199 VCNHAFHFHCISRWLKTRQ-VCPLDNR 276
           +C H F + CI + ++TRQ  CP+  R
Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPICGR 668


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
           C H F + CI+ W   +  CPL
Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 149 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVH*TIENGSSKSMVIKCHLEELH 328
           ++I P P+++ + +   +V  H I     +  ++D  +     NG+ KS ++K  +E+LH
Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569

Query: 329 P 331
           P
Sbjct: 570 P 570


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 291 KVWSLNVI*KSCILHRSLTSSEHRELTCQYL 383
           +VW L  + + CI  R   S E+ E TC  L
Sbjct: 25  EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 202  CNHAFHFHCISRWLKTRQVCPL 267
            C H +   C+  WLK    CP+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 202 CNHAFHFHCISRW-LKTRQVCPL 267
           C+H FH  CI  + LK   +CPL
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  GILLSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPVG 241
           G + +  +L A I  WI V   K    +PL+K   +L +F I++   TVF  G
Sbjct: 534 GAVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVFG 585


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 298 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 215
           H  G P  L+  +D+ +E     KY GNG
Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 28   GDKKRFEVKKWNAVA 72
            G+  RFEVK WN VA
Sbjct: 1538 GNAYRFEVKDWNLVA 1552


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCP 264
           C+H F   CI  +L+   +CP
Sbjct: 44  CSHTFCSFCIRDYLREHPMCP 64


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 202 CNHAFHFHCISRWLKTRQVCP 264
           C+H  H  C   +++T   CP
Sbjct: 290 CSHPLHQRCHEEYIRTNYRCP 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,088
Number of Sequences: 5004
Number of extensions: 44356
Number of successful extensions: 138
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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