Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12e02
(430 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 2e-08
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 36 0.014
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 33 0.076
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 32 0.18
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 32 0.18
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 31 0.31
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 31 0.31
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.71
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 30 0.94
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 30 0.94
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 0.94
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 28 2.9
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 27 5.0
SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 27 6.6
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 27 6.6
SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08) 27 6.6
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 27 6.6
SB_18827| Best HMM Match : wnt (HMM E-Value=1.6e-09) 27 6.6
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 55.2 bits (127), Expect = 2e-08
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 1 EMASSSSGKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM 129
E ++ K +K F +KKWNA+A+W+WD+ D CAICR +M
Sbjct: 17 EDLTTPKDKESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 38.7 bits (86), Expect = 0.002
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNR 276
C H FH CI WL T+ +CP+D +
Sbjct: 230 CRHVFHRDCIDSWLATQSICPVDGQ 254
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 35.9 bits (79), Expect = 0.014
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 103 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNRE 279
C I D+C+ C A S + + C H FH CI WL T CPLD E
Sbjct: 246 CVTVNEGIDDVCLICMEEYAVGDS----MKYLPCRHNFHSACIRTWLTYTSCKCPLDGLE 301
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 33.5 bits (73), Expect = 0.076
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 103 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 264
C++ R M C EC CT+ C H+FH HCI WL P
Sbjct: 546 CSVGRPSWMIPCGECVIC-LDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAP 598
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 32.3 bits (70), Expect = 0.18
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C+H+F +C+ WL+ R CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 32.3 bits (70), Expect = 0.18
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 202 CNHAFHFHCISRWLK 246
CNH FH CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 202 CNHAFHFHCISRWL-KTRQVCPLDNREWEFQK 294
C+HA+H C+ WL + ++ CP+ R E K
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPVCKRPVETSK 350
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 31.5 bits (68), Expect = 0.31
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C H FH C+ WL + CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 31.5 bits (68), Expect = 0.31
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 199 VCNHAFHFHCISRWLKTRQVCPL 267
VC H + C+SRWL+ CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.3 bits (65), Expect = 0.71
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNRE 279
C+H FH CI WL+ CP+ E
Sbjct: 80 CDHLFHPGCILPWLEKTNSCPVCRHE 105
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 29.9 bits (64), Expect = 0.94
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 291
C H +H CI +WLK R D +W+ +
Sbjct: 311 CLHEYHTRCIDKWLKNR-----DQSQWKLE 335
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 29.9 bits (64), Expect = 0.94
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +1
Query: 97 DNCAICRNHIMD-----LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 261
++C IC+ + + C C + C H F CIS W Q C
Sbjct: 459 NSCPICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFCEDCISLWFDREQTC 518
Query: 262 PL 267
P+
Sbjct: 519 PM 520
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 29.9 bits (64), Expect = 0.94
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 142 ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 264
EC + S+ +++ C H+F C S+W++ + CP
Sbjct: 61 ECYDVNVTLMSDSFSISLQPCMHSFCASCYSQWMEHSRDCP 101
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 199 VCNHAFHFHCISRWLKT---RQVCPL 267
+C H F + C+ RWL+T R +CP+
Sbjct: 77 MCGHLFCWPCLHRWLETRPNRSMCPV 102
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 DNCAIC-RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 228
D+ C R+H L C A +E+CT A C H HF C
Sbjct: 126 DSKVYCGRHHAETLKPRCAACDEIIFAEQCTEAEDSCWHVQHFCC 170
>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
Length = 655
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 355 SEDVKLLCRMQLF*MTFNDHTFGTPILYCLVDKLVESSTNG 233
SE+ K L + ++ TF+D ++YCL+D + S G
Sbjct: 22 SEETKEL--LAVYHKTFDDDRVDLDLIYCLIDHICNSGQQG 60
>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 170 VAEA*FAWHSIHRSIM*FRQIAQLSTTISQAQSA-TAFHFFTSNLFLSPLP 21
V A ++ +H +++ ++I +T I ++ F+F TS+L +SPLP
Sbjct: 48 VPSAPHSFGEVHTAVVGHQKIKPKNTLIHDIRNLHLVFYFRTSDLHVSPLP 98
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 100 NCAICRNHIMDLCIECQANQASATS 174
NC+I RN ++C C+A + S +S
Sbjct: 89 NCSISRNSSSEICPSCRALETSLSS 113
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -2
Query: 186 CAFFTSG*GLICLAFDTQIHYVISANSTVVDNNIPSPECYCIPLFYFESFFISFATTRRS 7
C + S + L+ T + Y++SA ++ + I S C C+ + ++ S + R
Sbjct: 1634 CLYIVSAYNIYTLSVRTLL-YIVSAFTSTLSVRITSIHCQCVYIVIVSAYTSSLSVHIRR 1692
Query: 6 H 4
H
Sbjct: 1693 H 1693
>SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)
Length = 186
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 7 ASSSSGKGDKKRFEVKKWNAVALWA 81
AS+S+ + +++F+ KWN ++WA
Sbjct: 22 ASNSAERECRQQFKASKWNCSSVWA 46
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 27.1 bits (57), Expect = 6.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKT 249
C H FH+ C+ +++KT
Sbjct: 254 CAHVFHYGCLDKYMKT 269
>SB_18827| Best HMM Match : wnt (HMM E-Value=1.6e-09)
Length = 147
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 7 ASSSSGKGDKKRFEVKKWNAVALWA 81
AS+S+ + +++F+ KWN ++WA
Sbjct: 22 ASNSAERECRQQFKASKWNCSSVWA 46
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPLDNREWE 285
C H F CI W K ++ EWE
Sbjct: 120 CMHVFCLECILEWSKIPVEKVIEEEEWE 147
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +1
Query: 202 CNHAFHFHCISRWLKTRQVCPL 267
C H F C+ W+ CPL
Sbjct: 72 CGHVFCSQCLVHWIAENGTCPL 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,412
Number of Sequences: 59808
Number of extensions: 325644
Number of successful extensions: 744
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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