Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12e02
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.83 
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   1.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 249 SLQPTGNTVEMECMITNT 196
           S +P  NTVE  C++ NT
Sbjct: 473 STRPKSNTVENACVLKNT 490


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 114 PKSHNGSVY 140
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 162 GLICLAFDTQIHYVISANSTVVDNN 88
           G+IC A      YV++A   ++D N
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDEN 209


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 64 HSTFLLRIFFYLLCHY 17
          H T LL++  YL C Y
Sbjct: 40 HPTTLLKLKRYLFCEY 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,166
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)