Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d23
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.001
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    34   0.016
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    33   0.028
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   5.6  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   5.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +3

Query: 219 VILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPALEIDG 398
           ++LH +  +S S R+  ML    +P+E +  D  +   +    Y  ++P  K P +  DG
Sbjct: 2   IVLH-HLKNSRSTRIVWMLEELKVPYEIKVYD--RVDGRAPPAYTKLSPLGKSPIVVDDG 58

Query: 399 VTLVESMAIIQYI 437
           VT +ES AI++++
Sbjct: 59  VTYIESAAILEHL 71


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +3

Query: 255 WRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAI 425
           W+V   L   ++ +E+   D  K G+Q  +E+ A+NP  +VP L   + +  T+ ES AI
Sbjct: 16  WKVVLALKELNLSYEQIFYDFQK-GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAI 74

Query: 426 IQYIED 443
           + Y+ D
Sbjct: 75  LIYLAD 80


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +3

Query: 255 WRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAI 425
           W+V   L    + +E R V+  K  +Q + E+ A+NP  +VP L     +  T+ ES AI
Sbjct: 16  WKVVQALKELDLTYETRYVNFSKN-EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAI 74

Query: 426 IQYIED 443
           + Y+ D
Sbjct: 75  LIYLAD 80


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 166 QQFFAPFLFTIVFSLERIYTIYFVRI*FDISY 71
           QQ+   + F  VF ++ +++++F  + F I Y
Sbjct: 90  QQYHGKWYFIRVFGIQELFSVFFSMLNFMIHY 121


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 416 YGDNTVHRRYET*TETHARHSTTTRPYERNMR 511
           +G +  H  Y T    H RHSTT    +R+ R
Sbjct: 149 HGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDR 180


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 415 DSTKVTPSISRAGTFCAGLMALYSSVSCL 329
           +S K+  +IS  G+F A L   YSS S +
Sbjct: 31  ESLKLKSNISHTGSFFANLSQSYSSTSII 59


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 422 DNTVHRRYET*TETHARHSTTTRPYER-NMRDYCIRY 529
           +N  HR Y++ + TH  +   T  Y R  + D C+ +
Sbjct: 621 NNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSW 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,714
Number of Sequences: 5004
Number of extensions: 44525
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)