Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d23
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 45   4e-05
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 29   3.3  
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   28   4.4  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       28   5.8  

>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +3

Query: 426 IQYIEDTRPEPKLMP-DTALQRARMREICETIVSGIQPLQN 545
           ++Y+++TRP+P L+P     +RA +R+I  TI SGIQP+QN
Sbjct: 1   MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQN 41


>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 544 FCNGCIPDTIVSHISLIRARCSAVSGMSFGSGLVSSMYCIIAIDSTKVTPSISR 383
           FC GC   T V H     + C+A  GM +G  L S++Y     +     PS++R
Sbjct: 306 FC-GCSHKTAVHHPKTSASSCNASVGMEYGYYLPSNIYSSSEEEKKVYGPSLAR 358


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
 Frame = +3

Query: 210 ENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQ-KVPAL 386
           +N++ L++      + R R +L AK + +E   V++    K   E ++     + KVP L
Sbjct: 27  QNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNL----KSKPEWFQTHPDCEGKVPTL 82

Query: 387 E-IDGVTLVESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG 527
           E +DG  + ES+ I +++ED   +  L P     ++R + + +    G
Sbjct: 83  ETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDKG 130


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 264 RAMLHAKSIPFEERPVDIVKTGKQLTEEYRAINPAQK--VPALEIDGVTLVESMAIIQ 431
           R    A  IP+E    D+  TG++ T+  +A N      +P LE+DG+   ESMAI +
Sbjct: 19  RLCFAAGGIPYE----DVRLTGEEWTK-MKAENKTIMGYLPVLEVDGIQYCESMAIFR 71


>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 407 SRIYGDNTVHRRYET*TETHARHS-TTTRPYERNMRDYCIRY 529
           +R +G N      +T T+THARH  T TR    N+   CIRY
Sbjct: 303 TRTHGTNIHGLIPQTYTDTHARHKHTRTRTLGINIHG-CIRY 343


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 198 ATMVENRVILHAYWLSSCSWRVRAMLHAKSIPFEERPVDIVKTGKQL 338
           AT VEN  +L A+        V   L  K    +E+P+  +K  K L
Sbjct: 498 ATAVENSTMLVAFLTEKYQQSVNCNLELKYATMKEKPIIFIKAEKDL 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,335
Number of Sequences: 59808
Number of extensions: 324063
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)