Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d22
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   7e-04
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   1.8  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               28   4.3  
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)                   28   4.3  
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)                27   5.6  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      27   5.6  
SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       27   7.5  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        27   9.9  

>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +1

Query: 136 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 249
           D  + DP  +NPFADPSV  +   T+ A+RGL D+NPF
Sbjct: 3   DGGYGDP--ENPFADPSVTDM---TSGASRGLGDFNPF 35


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 272 NPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLH 382
           NP  +   QHN Q  +L H +P  S+    S+ Q LH
Sbjct: 361 NPLFNQFLQHNNQQQQLFHPEPDVSSPVMTSQAQHLH 397


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 97  NSAENLLRMSKFEDNPFSDPTIDNPFADPSVQQVARST 210
           N  EN  +M     N +  P    PF  P+VQ VAR+T
Sbjct: 716 NMMENNYQMGVEMQNSWDMPDSVYPFTPPNVQPVARAT 753


>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
          Length = 718

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 457 PAAPTPRPSVLAPLAASENQQL*NLVEALKP 365
           P   T RPS  +PL A E+ ++   +EAL P
Sbjct: 288 PVVSTARPSTFSPLPAQESPEM-ACIEALSP 317


>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
          Length = 1133

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 236 TTILSTANKMLINPRLSNSNQHNRQSCRLCHH---QPAASTQDPHSR 367
           TTI+ TA   L  P+  +   H   +C LC     QP +   D  SR
Sbjct: 416 TTIMETAVPPLFGPQSKSEKGHKSSACPLCRQRNGQPQSVQCDSCSR 462


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 325 SPPASSQYTRPAQQASAPPP 384
           +PP    YT P   A APPP
Sbjct: 710 TPPPQQAYTSPPSSAPAPPP 729


>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 350 QDPHSRLQRLHQISQLLIFRGGKRS*NGRPRSWRGGK 460
           + PH+R  R+  ++Q    RGG+R      +  RGG+
Sbjct: 236 EHPHTRYARISPLTQSRRTRGGRREDEDVGKKTRGGR 272


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 224 VV*KTTILSTANKMLINPRLSNSNQHNRQSCRLCHH 331
           VV  TTI+++++     P LS+S+ H+ +   LCHH
Sbjct: 47  VVITTTIITSSSSSSPLP-LSSSHHHHHRRHYLCHH 81


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 325  SPPASSQYTRPAQQASAPPP 384
            +PP   QY  PA+ A  PPP
Sbjct: 2123 TPPPMGQYGAPARPAMGPPP 2142


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 312 HAGCVTTSQQPVHKTRTAGFSASTKFHN 395
           +   VT S+  V+ TRT  FSAS + HN
Sbjct: 879 YLAAVTMSRPFVYITRTETFSASHRLHN 906


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,689
Number of Sequences: 59808
Number of extensions: 228359
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)