BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d22 (460 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 32 0.17 AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 32 0.17 U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 27 6.6 U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 27 6.6 AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical... 27 6.6 AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical... 27 6.6 >AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory carrier membrane protein protein. Length = 335 Score = 32.3 bits (70), Expect = 0.17 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 136 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 249 DNPF+DP P + ++ T+ T ED+NPF Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40 >AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic vesicle protein)homolog protein 1 protein. Length = 335 Score = 32.3 bits (70), Expect = 0.17 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 136 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPF 249 DNPF+DP P + ++ T+ T ED+NPF Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF 40 >U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical protein F10D7.5c protein. Length = 437 Score = 27.1 bits (57), Expect = 6.6 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 331 PASSQYTRPAQQASAPPP 384 P+SS Y PA A APPP Sbjct: 265 PSSSSYLAPAVPARAPPP 282 >U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical protein F10D7.5a protein. Length = 617 Score = 27.1 bits (57), Expect = 6.6 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 331 PASSQYTRPAQQASAPPP 384 P+SS Y PA A APPP Sbjct: 445 PSSSSYLAPAVPARAPPP 462 >AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical protein H06I04.1b protein. Length = 428 Score = 27.1 bits (57), Expect = 6.6 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 328 PPASSQYTRPAQQASAPPPNFTT 396 PP SS +P + PPPN T Sbjct: 12 PPGSSSSAKPVTSSKKPPPNDVT 34 >AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical protein H06I04.1a protein. Length = 456 Score = 27.1 bits (57), Expect = 6.6 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 328 PPASSQYTRPAQQASAPPPNFTT 396 PP SS +P + PPPN T Sbjct: 12 PPGSSSSAKPVTSSKKPPPNDVT 34 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,449,601 Number of Sequences: 27780 Number of extensions: 173614 Number of successful extensions: 621 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 619 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 820565746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -