Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d22
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51340.1 68418.m06366 expressed protein                             30   0.86 
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   2.0  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    28   2.6  
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ...    28   3.5  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    28   3.5  

>At5g51340.1 68418.m06366 expressed protein 
          Length = 726

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 10/33 (30%), Positives = 25/33 (75%)
 Frame = -3

Query: 185 DGSAKGLSMVGSLNGLSSNLDILNKFSALLFSF 87
           + S+K L ++G LNG++++L  + + +++LF++
Sbjct: 505 ESSSKALDLIGPLNGMTNSLSGVREEASILFAY 537


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 325 SPPASSQYTRPAQQASAPPPNFT 393
           SPP +S  T P   AS+PPP  T
Sbjct: 17  SPPTNSTTTTPPPAASSPPPTTT 39


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 325 SPPASSQYTRPAQQASAPPPN 387
           SPPA S  T P  + S PPP+
Sbjct: 41  SPPADSSSTPPLSEPSTPPPD 61


>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 245 LSTANKMLINPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQISQLLIFR 409
           L T    L  PRLS   QH        + Q     +DP   L++LHQ+ +L + R
Sbjct: 757 LKTLTLKLYMPRLSKE-QHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRR 810


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 245 LSTANKMLINPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQISQLLIFR 409
           L T    L  PRLS   QH        + Q     +DP   L++LHQ+ +L + R
Sbjct: 649 LKTLTLKLYMPRLSKE-QHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRR 702


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,099
Number of Sequences: 28952
Number of extensions: 158825
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)