Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d20
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   1.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   2.1  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   2.1  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   4.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.6  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 RQRYFKYLAFRSRLIVEIGRRENSFNFKQCFFL 368
           RQ   + LA   ++++ + +   +FN + CF L
Sbjct: 486 RQEQMRLLAVLEQVLINVAKNTPAFNLQSCFLL 518


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 40  IASFHRSNGGWLVASRIPFTGKQNLKISRRVED 138
           I   H   GG+LV + IP      +KI+ ++ED
Sbjct: 280 IIGIHPIFGGFLVGTIIPHENDLTVKITEKIED 312


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 371 LQKKTLFKIKTVFTPAYFHYKSAPERKVFEISLPIVSVPRK 249
           L ++T+ ++KT    A F    +P  KV   S PIV++ +K
Sbjct: 59  LPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVALRKK 99


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 326 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPT 234
           AY    ++PE KVF+  +P+   P+   KP  PT
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPT 383


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 297 FRSRLIVEIGRRENSFN 347
           F SRL VE G+ EN FN
Sbjct: 801 FLSRLNVESGKAENKFN 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,280
Number of Sequences: 5004
Number of extensions: 39863
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)