Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d20
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0180 - 1524302-1524877,1525998-1527056                           29   2.8  
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771...    27   6.5  
04_01_0015 - 235068-235231,238714-239701                               27   8.7  

>08_01_0180 - 1524302-1524877,1525998-1527056
          Length = 544

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 13  WKINEEPVMIASFH-RSNGGWLVASRIP----FTGKQNLKISRRVEDAGGS 150
           W+ +   +++  +H R    WL A  +     F GK N  ++ RV+D GG+
Sbjct: 424 WRCDGVHILVLRYHPRRRPCWLPAKDLGGYSVFVGKNNNAVALRVDDGGGA 474


>11_02_0047 +
           7716315-7716420,7716518-7716647,7716785-7716856,
           7717007-7717078,7717274-7717345,7717684-7717845,
           7718105-7718176,7718435-7718503,7718788-7718859,
           7718992-7719129,7719386-7719888,7720007-7720171,
           7720267-7720403,7720488-7720707,7720793-7721028,
           7721165-7721632
          Length = 897

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 229 LGVGRQGFRGTDTIGSDISNTL 294
           LG+    F GT TIGSD S+TL
Sbjct: 276 LGLKGNNFNGTLTIGSDYSSTL 297


>04_01_0015 - 235068-235231,238714-239701
          Length = 383

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 470 WFGDFKIYTIFYASQRQVFLAE*DFK 393
           WF    ++T+ + + R+  +AE DFK
Sbjct: 73  WFNKIPVFTVVWVANRERSIAEPDFK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,321,383
Number of Sequences: 37544
Number of extensions: 236709
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)