Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d20
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      31   0.41 
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)                 29   2.9  
SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)                  27   8.9  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              27   8.9  

>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 274 CLSYPCHENPACRLRDKK 221
           C+S PCHE   CRL D+K
Sbjct: 163 CVSNPCHEGATCRLLDEK 180


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 326 AYFHYKSAPERKVFEISLPIVSVPR--KPCLPTP 231
           AYF  ++A E+K    S+P+  VP    P  PTP
Sbjct: 375 AYFRQQAAKEQKAASTSMPVKKVPAPVSPAQPTP 408


>SB_12715| Best HMM Match : Adeno_E1A (HMM E-Value=1.3)
          Length = 909

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 183 NFSKSYLNISRCIFLSRSRQAGFSWHGYDRQRYFKYLAFRSRLIV 317
           ++S+  ++  +C+  S+ R+    WH Y     ++ L F SR++V
Sbjct: 692 SYSRVVVDYVKCLRDSKKRRGRLHWHMYCMMWLWRSLLFTSRVLV 736


>SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 183 NFSKSYLNISRCIFLSRSRQAGFSWHGYDRQRYFKYLAFRSRLIVEIGRRENSFNFKQCF 362
           ++S++ +N  +C+  S+  +    W+GY    +++     SR++  +     +  FK  F
Sbjct: 166 SYSRAVVNYIKCLRDSKKNKGRLKWYGYIAMWFWRAFMIISRILTLV---FFATEFKLYF 222

Query: 363 FL 368
           FL
Sbjct: 223 FL 224


>SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 289 YLKYRCLSYPCHENPACRLRDKKIHLEMFR*LFEKLR*NI 170
           + K  C + PC    AC++RD+K H E FR   ++L+ +I
Sbjct: 340 HTKTMCKNNPCSSRRACKIRDEK-HPE-FRSKIQQLQRDI 377


>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
          Length = 276

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 125 LEIFKFCLPVNGIRDATNHPPLER*NDAIITGSSFIFQP 9
           L I  +CL V+G+  A  H  +   +     G  FIFQP
Sbjct: 80  LAICGYCLSVHGLLSALCHCGIRANSSVDRRGDKFIFQP 118


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 240 ADSEIKKYILKCLDNFSKSYDET-LTLINI*GAP-RVLNSS-RDL*VLFAGKRDTRCNQP 70
           A  E+KK + KC D   + +D T L      G+  R LN    D+      KR     Q 
Sbjct: 416 AAKELKKMVEKCKDRIERLHDMTELKFEREMGSKIRTLNEHFDDIAKHLEEKRAVAIRQV 475

Query: 69  SAVRTMKRCNHN 34
            A   +K+C+H+
Sbjct: 476 EAAFEIKKCHHH 487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,406,372
Number of Sequences: 59808
Number of extensions: 274045
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)