Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d20
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43120.1 68416.m04532 auxin-responsive protein-related simila...    28   3.1  
At5g20810.1 68418.m02472 auxin-responsive protein, putative / sm...    27   7.3  
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family...    27   7.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    27   9.6  

>At3g43120.1 68416.m04532 auxin-responsive protein-related similar
           to indole-3-acetic acid induced protein ARG7 (SP:P32295)
           from [Phaseolus aureus]
          Length = 160

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 249 TLPADSEIKKYILKCLDNFSK 187
           T+P + E  KY+LKC++N  K
Sbjct: 127 TIPCEVETFKYLLKCIENHPK 147


>At5g20810.1 68418.m02472 auxin-responsive protein, putative / small
           auxin up RNA (SAUR_B) similar to indole-3-acetic acid
           induced protein ARG7 SP:P32295 from [Phaseolus aureus]
          Length = 165

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 249 TLPADSEIKKYILKCLDN 196
           T+P + E  KY+LKC++N
Sbjct: 127 TIPCEVETFKYLLKCMEN 144


>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
           protein identical to proline-rich protein 2 [Arabidopsis
           thaliana] gi|7620011|gb|AAF64549
          Length = 321

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 272 PIVSVPRKPCLPTPR 228
           P+V +P+KPC P P+
Sbjct: 283 PVVVIPKKPCPPLPK 297


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 272 PIVSVPRKPCLPTPR 228
           P+V +P+KPC P P+
Sbjct: 404 PVVVIPKKPCPPLPQ 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,458
Number of Sequences: 28952
Number of extensions: 203407
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)