BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d19 (596 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical pr... 36 0.029 AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 29 3.3 Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 7.7 Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 7.7 Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical pr... 27 7.7 AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. 27 7.7 >U39648-9|AAM15605.1| 186|Caenorhabditis elegans Hypothetical protein T13C5.6 protein. Length = 186 Score = 35.5 bits (78), Expect = 0.029 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = +2 Query: 413 FVRRRRPVPM-NKLMEVGPDKFSFPSGHASRAVLI 514 + R RP+ +KL+E D +SFPSGH+SRA ++ Sbjct: 85 YFHRERPIKTYSKLLEHTVDIYSFPSGHSSRAAML 119 >AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia telangectasia mutated)family protein 1 protein. Length = 649 Score = 28.7 bits (61), Expect = 3.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 263 IENGSVKTLEQLFLVLCQQMSS*FEHHTAKFFST 162 ++ S +T Q+F+ +CQQ S F H FST Sbjct: 430 VQTESTETRRQVFVEICQQYSPVFRHFFYTNFST 463 >Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein F25C8.3b protein. Length = 3175 Score = 27.5 bits (58), Expect = 7.7 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 131 ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 274 +TE+ Q P PML + +Q+ + + LK L S+ H Q++E+ Sbjct: 1664 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1715 >Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein F25C8.3a protein. Length = 3184 Score = 27.5 bits (58), Expect = 7.7 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 131 ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 274 +TE+ Q P PML + +Q+ + + LK L S+ H Q++E+ Sbjct: 1673 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1724 >Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical protein K08H2.1 protein. Length = 176 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 523 NERDEHSPACMSGWE*ELIRTNFHELIH 440 NE +H+ ++ W+ + IRTN L+H Sbjct: 70 NEDQDHAQRILTAWDVQFIRTNSAILLH 97 >AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. Length = 172 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 523 NERDEHSPACMSGWE*ELIRTNFHELIH 440 NE +H+ ++ W+ + IRTN L+H Sbjct: 66 NEDQDHAQRILTAWDVQFIRTNSAILLH 93 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,210,170 Number of Sequences: 27780 Number of extensions: 259512 Number of successful extensions: 541 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 541 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1268802960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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