Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d19
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 364 HINLQLVKIFTIK 326
           ++NL +VK+FTIK
Sbjct: 289 YVNLVIVKVFTIK 301


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 497 LHVRMGMRTYQDQL 456
           + + MGMRTY+D L
Sbjct: 97  IDIFMGMRTYEDFL 110


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 258  EWFRKDFRAVIFSAL 214
            EW R +FRA +  AL
Sbjct: 1139 EWSRFEFRAALHEAL 1153


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 431 VDVFLQMLSIQLPQQCLKLVQSTY 360
           +D+   M+   L Q C +  Q+TY
Sbjct: 188 LDIIRNMVPENLVQACFQQAQTTY 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,101
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)