Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d17
         (538 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    44   0.002
UniRef50_Q91FP3 Cluster: 281R; n=1; Invertebrate iridescent viru...    33   5.5  
UniRef50_Q3WCX6 Cluster: Similar to ATPase; n=2; Actinomycetales...    33   5.5  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +3

Query: 84  LFADDTAIYYSCRKKALLHRRLQTAATTMGE 176
           LFADDT +YYS R K+L+  +LQ+AA T+G+
Sbjct: 681 LFADDTTVYYSSRNKSLIASKLQSAALTLGQ 711


>UniRef50_Q91FP3 Cluster: 281R; n=1; Invertebrate iridescent virus
           6|Rep: 281R - Chilo iridescent virus (CIV) (Insect
           iridescent virus type 6)
          Length = 52

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 308 DDIDIFMYVLHCVPL*F*KLNLLHVSFLMIITFKVYLILYS 430
           ++IDIF+Y+LHC  L    LN + + FL    F   LI ++
Sbjct: 9   EEIDIFVYLLHCQDL---NLNTIRLLFLNAFKFSCLLIFHA 46


>UniRef50_Q3WCX6 Cluster: Similar to ATPase; n=2;
           Actinomycetales|Rep: Similar to ATPase - Frankia sp.
           EAN1pec
          Length = 674

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 79  CCSSPMTRPSTTRVGRRRCFIGDFRPQPPPWESSAALA 192
           CCS P +R STT   RRR      RP+ P   S A  A
Sbjct: 83  CCSRPWSRASTTGTSRRRSPFSGARPRWPSRRSPARSA 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,635,692
Number of Sequences: 1657284
Number of extensions: 7608043
Number of successful extensions: 17263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17258
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)