Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d17
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   5.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   5.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   5.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   5.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.9  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 KLNLLHVSFLMIITFKVYLILYSEPVPLVVSH 457
           KLN L V F++I   + +L  YS     +V H
Sbjct: 135 KLNTLTVVFMLIALGEHWLSRYSWAKVFLVEH 166


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 KLNLLHVSFLMIITFKVYLILYSEPVPLVVSH 457
           KLN L V F++I   + +L  YS     +V H
Sbjct: 135 KLNTLTVVFMLIALGEHWLSRYSWAKVFLVEH 166


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 395 SSGMK-RAISSAFKITTVRNEVHT*KYLCR 309
           S+G + R   ++ ++  +  E H  KYLCR
Sbjct: 83  SNGKRARTAYTSSQLVELEREFHRSKYLCR 112


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 395 SSGMK-RAISSAFKITTVRNEVHT*KYLCR 309
           S+G + R   ++ ++  +  E H  KYLCR
Sbjct: 103 SNGKRARTAYTSSQLVELEREFHRSKYLCR 132


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 137 KQRLLPTRVVDGRVIGEEQHCS 72
           ++  +   ++DGR+IG +Q  S
Sbjct: 249 REEYVTRHLIDGRIIGCDQRIS 270


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 465 KTPHKSPYELTSCQIVSDSKIAVW 536
           +TP + P + T+  +  + ++A W
Sbjct: 174 RTPIEIPQDFTASDLDEEHRVAYW 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,524
Number of Sequences: 336
Number of extensions: 2092
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)