Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12d17
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0856 + 20336390-20336906,20337276-20337397 30 1.3
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 29 2.3
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 29 3.1
02_05_1236 + 35141404-35142731,35142753-35143089,35143228-351433... 29 3.1
06_03_0189 - 17697779-17698939 27 7.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 9.5
06_03_0872 - 25575201-25575312,25576027-25576133,25577096-255771... 27 9.5
02_04_0487 + 23353587-23354603 27 9.5
02_04_0484 + 23307119-23308135 27 9.5
>04_03_0856 + 20336390-20336906,20337276-20337397
Length = 212
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 SSPMTRPST-TRVGRRRCFIGDFRPQPPPWESSAALAR 195
SSP S TRVGRRR F F PP W + R
Sbjct: 11 SSPRGDASAPTRVGRRRAFPLPFASPPPEWPAGKLAGR 48
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 148 FRPQPPPWESSAALARISVSITP 216
FRP PPW+++ A + V +TP
Sbjct: 169 FRPDVPPWQAALRDALLEVGVTP 191
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +1
Query: 94 MTRPSTTRVGRRRCFIGDFRPQPPP-----WESSAALARI 198
M +T R G F G RP PPP WE +A L RI
Sbjct: 37 MRGSATPRAGAVGHFRGGLRPPPPPPTPFGWEEAARLERI 76
>02_05_1236 +
35141404-35142731,35142753-35143089,35143228-35143305,
35143395-35143703,35144449-35144572,35144620-35144789
Length = 781
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 IFSVGRVSDPVVDS-VKCFSSQLARAVLLFADDTA 104
+F G V+ +VD+ VKC S +LAR V A D A
Sbjct: 232 VFHSGEVATSLVDAYVKCRSMELARQVFDLAGDNA 266
>06_03_0189 - 17697779-17698939
Length = 386
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 51 CFSSQLARAVLLFADDTAIYYSCRKKALLHRRLQTAAT 164
CFS + ADD + ++CRKK ++ AA+
Sbjct: 175 CFSDSCIMWIRSLADDRGVRHACRKKQTRKEVVRVAAS 212
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 155 GLKSPMKQRLLPTRVVDGRVIGEEQHCSC 69
G+KSP K L+P R +D +CSC
Sbjct: 387 GMKSPDKFVLVPNRTLDACAAECSSNCSC 415
>06_03_0872 -
25575201-25575312,25576027-25576133,25577096-25577166,
25577294-25577391,25577490-25577586,25577834-25577878,
25578269-25578413
Length = 224
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 308 DDIDIFMYVLHCVPL 352
DD++ MY+LHC+PL
Sbjct: 163 DDVEPGMYMLHCLPL 177
>02_04_0487 + 23353587-23354603
Length = 338
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 227 GAQTGVMLTLILARAALLSHGGGCGLKSPMKQRLLPTRVVDGRV 96
G + +L LA L HG L S + LLP RV DG V
Sbjct: 5 GDASAAVLDPKLAPLLLFGHGDATSLYSVPARALLPRRVGDGGV 48
>02_04_0484 + 23307119-23308135
Length = 338
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 227 GAQTGVMLTLILARAALLSHGGGCGLKSPMKQRLLPTRVVDGRV 96
G + +L LA L HG L S + LLP RV DG V
Sbjct: 5 GDASAAVLDPKLAPLLLFGHGDATSLYSVPARALLPRRVGDGGV 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,663
Number of Sequences: 37544
Number of extensions: 213395
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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