Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d17
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)                       31   0.79 
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   9.7  

>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
          Length = 395

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 212 VMLTLILARAALLSHGGGCGLKSPMKQRLL 123
           VM+T+ L+RA L+SH  G  L SP  Q  L
Sbjct: 70  VMITMSLSRAFLVSHERGFSLSSPYVQEFL 99


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 185 AALLSHGGGCGLKSPMKQRLLPTRVVDGRVIGEE 84
           A   S GG CG  + + Q ++P    D +V  EE
Sbjct: 375 ACQTSAGGSCGSATKVGQTIIPASTCDSKVTCEE 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,937
Number of Sequences: 59808
Number of extensions: 246937
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)