Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d17
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44542.1 68414.m05118 cyclase family protein contains Pfam pr...    29   2.0  
At5g18740.1 68418.m02224 expressed protein predicted proteins - ...    28   3.4  
At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1) id...    28   4.5  
At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    27   6.0  
At1g69526.1 68414.m07992 UbiE/COQ5 methyltransferase family prot...    27   6.0  
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    27   7.9  

>At1g44542.1 68414.m05118 cyclase family protein contains Pfam
           profile: PF04199 putative cyclase
          Length = 271

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 308 DDIDIFMYVLHCVPL 352
           DD+++ MY LHC+PL
Sbjct: 241 DDVEVGMYTLHCLPL 255


>At5g18740.1 68418.m02224 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 609

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 287 VGKKKCSDDIDIFMYVLHC 343
           +G+ KC+ D  IF +V+HC
Sbjct: 249 LGENKCTQDRSIFSHVIHC 267


>At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1)
           identical to sugar-porter family protein 1 [Arabidopsis
           thaliana] GI:14585699
          Length = 474

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 314 CRHYTFFFLPKLIALRGYFSITLTSR*AHGAQTGVMLTLILARAALLSHG 165
           CR      L   +A+ G FS  + +    GA+TGVM  L L+ A   + G
Sbjct: 25  CRITACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFG 74


>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 368 NLLHVSFL--MIITFKVYLILYSEPVPLVVSHDTQ 466
           NLL  +F   +++ F+VY I+Y+ P+ LV+  DTQ
Sbjct: 165 NLLQAAFWYGLVVHFRVYPIIYALPIILVL--DTQ 197


>At1g69526.1 68414.m07992 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 228

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 94  SAKSSTALASCEEKHFTESTT 32
           S  SST+L SC  KHF E+ +
Sbjct: 46  SGSSSTSLCSCGRKHFLEAAS 66


>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 402 VMIIRNETCNKFSFQNYNGTQ*STYIKISMSSLHFFFPT*ADSLERL 262
           VM ++N  C +   Q       S  I   ++  H   P   DS+ERL
Sbjct: 338 VMSVKNAACERLLDQRVEAKMKSKKINDHLNRFHVAIPKPRDSIERL 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,888
Number of Sequences: 28952
Number of extensions: 170558
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)