Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d15
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   2.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   2.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   2.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   3.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   4.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    24   4.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   6.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    23   8.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     23   8.3  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 208 LILPGIXSFGKVLFIIGALIY 146
           +I P I  FG + FIIG L+Y
Sbjct: 650 IISPLILVFGLIYFIIGFLVY 670


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -2

Query: 151 IYFLHQQNNLFLYHNTVYLFFTI 83
           ++FLH  + +++ H +V+ +FT+
Sbjct: 418 LHFLHNFSRIWILHISVFWYFTV 440


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +1

Query: 10  DRKTTKLKVETIEDIIDVNENNDVLS*KINILCCDIKINYFVGVKNI 150
           +R+     ++ +  +++VN    ++S  + +LC      Y  G+K I
Sbjct: 506 ERRAITDAMQIVRRLLEVNPKYSIVSWHLLVLCVSCSEQYAAGIKLI 552


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 210 IRAFPMTMDEKYVERIWSLLKNAI 281
           +RAF +T DEKY+++   L  + I
Sbjct: 747 LRAFGVTEDEKYIQKTLDLTLDPI 770


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 193 IXSFGKVLFIIGALIYFLHQQNNLFLYH 110
           I S   V F+I +  +F++ Q NLF+YH
Sbjct: 240 IPSKAVVEFLINS--FFINVQTNLFVYH 265


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 227 HRESSDPHFARYXVFWQSTFHHW 159
           H+ S  PH  RY  FW      W
Sbjct: 27  HKISFHPHLQRYIGFWMGFPIRW 49


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 144 KYIKAPMMKSTLPKDXIPGKMRI-RAFPMTMDE 239
           K I+APM    LP   I GK+ I  A  +T+ +
Sbjct: 53  KSIEAPMFPILLPPPNITGKLHIGHALTITIQD 85


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  TTKLKVETIEDIIDVNENNDVLS*KIN 99
           T + K+E ++D  D+  NNDV    IN
Sbjct: 67  TKRAKIENLKDNQDLIPNNDVNGIHIN 93


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 126  LFCWCKKYIKAPMMKSTLPKDXIPGKM--RIRAFPMTMDEKYVER 254
            LF W +KY   P M+    +D  PG +    R +    +EK + R
Sbjct: 925  LFDWSRKYFTEPQMRPN--EDDEPGSICYNQRLWRRNRNEKLIYR 967


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 259 HIRSTYFSSIVIGKALILILPGIXSFGKVLFIIGALI 149
           ++R TY  + ++   L+    G  S+GK LF I  LI
Sbjct: 486 YMRDTYRYTPMLAILLLPTQYGFPSWGKYLFSISDLI 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,003,608
Number of Sequences: 5004
Number of extensions: 14985
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)