Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d15
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0146 - 953957-956278,956468-956786,957185-957213                 26   3.9  
02_05_0737 - 31328473-31330513,31331015-31331184                       26   3.9  
06_03_1204 - 28385702-28385964,28387172-28387412,28387511-283876...    25   9.0  
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    25   9.0  
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    25   9.0  

>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   ESMDRKTTKLKVETIEDIIDVNENND 78
           E +  KTT L++E    + DVNE+N+
Sbjct: 404 EVLKGKTTALEIEVARLLADVNESNE 429


>02_05_0737 - 31328473-31330513,31331015-31331184
          Length = 736

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 KMRIRAFPMTMDEKYVERIWSLLKNAI 281
           K+ +    + +D KY ER W +L++AI
Sbjct: 13  KIELFKHRVELDPKYAERTWKVLEHAI 39


>06_03_1204 -
           28385702-28385964,28387172-28387412,28387511-28387664,
           28387750-28387981,28388157-28388192,28388365-28388566,
           28388661-28388848,28389420-28389505,28389526-28389597,
           28389826-28389881,28390266-28390697
          Length = 653

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 271 FNKLHIRSTYFSSIVIGKALILILPGIXSFGKVLFIIGALIYFLHQQNN 125
           F +LH++     S + GK+L++ +       K++ I   L  F+H + N
Sbjct: 195 FIELHVQGAAKPSEIGGKSLVVTVDPQPQEEKIMDIEAVLKLFVHTEEN 243


>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 177 LPKDXIPGKMRIRAFPMTMDEKYVERIWSLLKNA 278
           L +D +   +R + F + MD+ + +R+WS L  A
Sbjct: 218 LLEDTLKHAVRQKRFLLVMDDVWSDRVWSDLLRA 251


>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 148 YFLH-QQNNLFLYHNTVY 98
           Y LH +++N  LYH+TVY
Sbjct: 539 YLLHYKEDNSLLYHHTVY 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,780,397
Number of Sequences: 37544
Number of extensions: 77310
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)