Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d15
         (281 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       26   4.1  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        26   4.1  
SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 197 RYXVFWQSTFHHW 159
           RY V WQS FH W
Sbjct: 410 RYEVLWQSRFHAW 422


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 247  TYFSSIVIGKALILILPGIXSFGKVLFIIGALI-YFLHQQNNLFLYHN 107
            T F +I+IG  ++LI+P I     V+ II  +I  F H  ++   +H+
Sbjct: 994  TIFITIIIGVVVVLIIPIIIIVIIVIIIITIIITIFNHYHHHRRRHHH 1041


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 181 GKVLFIIGALIYFLHQQNNL 122
           GKV+F++ A++ F H  +NL
Sbjct: 267 GKVMFVVNAVLSFAHALHNL 286


>SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 250 STYFSSIVIGKALILILPGIXSFGKVLFII 161
           S +  S+  GK L ++      +GKVLF++
Sbjct: 68  SLHTRSLKYGKVLFVVTNSSLKYGKVLFVV 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,045,317
Number of Sequences: 59808
Number of extensions: 100543
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)