Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d15
         (281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        39   6e-04
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    39   6e-04
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...    28   0.90 
U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    27   2.7  
Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    25   6.3  
Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +3

Query: 201 KMRIRAFPMTMDEKYVERIWSLLKNAI 281
           KMRIR F  T+DE+YV + W LLK AI
Sbjct: 12  KMRIRPFMATIDEQYVTQTWELLKRAI 38


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +3

Query: 201 KMRIRAFPMTMDEKYVERIWSLLKNAI 281
           KMRIR F  T+DE+YV + W LLK AI
Sbjct: 12  KMRIRPFMATIDEQYVTQTWELLKRAI 38


>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 84  IVKNKYTVL*YKNKLFCWCKKYIKAPMMKSTLPKDXIPGKMRIRAFP 224
           I+++K T L Y  +LF   +K I+   +K  +PK+  PG+ R+   P
Sbjct: 3   ILRSKITRL-YWFRLFSNGQKKIEYSKLKVAVPKEIFPGEKRVSLSP 48


>U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical
           protein F54E7.1a protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 214 LILILPGIXSFGKVLFIIGALIYFLHQQNNLFLYHNT 104
           LI  LPG+  FG  L +I  LIY         ++HNT
Sbjct: 62  LIFKLPGMKPFGWTLTLIQFLIYSGCGYTECIIWHNT 98


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 256 IRSTYF--SSIVIGKALILILPGIXSFGKVLFIIGALIYFLH 137
           I+ T+F  ++I  G+    I+  + S   ++FI+G L  F+H
Sbjct: 220 IKQTFFQGTTIFTGQVTYYIIAPLLSNSIIIFIVGTLWAFMH 261


>Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical
           protein C15C6.1 protein.
          Length = 194

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 271 FNKLHIRSTYFSSIVIGKALILILPG--IXSFGKVLFII 161
           F KLHI  T    + +G   ILI+ G     F K +F++
Sbjct: 26  FGKLHIHHTMNVIVAVGVLAILIIMGALYMKFRKAMFVM 64


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 202 LPGIXSFGKVLFIIGALIYFLHQQNNLFLYHNTVY-LFFTIKH 77
           LP   S  + L +     +FL+  NNLF+ H T Y L  +++H
Sbjct: 204 LPIFFSSSRPLVLFQKSPFFLNS-NNLFVSHQTTYYLSMSLRH 245


>Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.5 protein.
          Length = 329

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 148 YFLHQQNNLFLYHNTVYLFFTI 83
           ++++ Q NL++Y  T+ LFF +
Sbjct: 128 FYVYLQINLYIYRITLVLFFVV 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,427,058
Number of Sequences: 27780
Number of extensions: 82127
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)