Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d14
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    34   0.018
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    28   0.91 
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    28   0.91 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    27   2.8  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.7  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    26   4.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.5  
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    25   8.5  

>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 372 AEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISL 551
           ++  + ++GG     G  K      +    W+P      + S VL     + VT R +  
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 552 INDHYGFDHYLLK-TPA 599
           I+   G D YL+K TP+
Sbjct: 85  IDKEGGLDEYLVKSTPS 101


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 329 FTSQFVAFPLPFLRNEMYSCWLQYLPLTPKFFISRW 222
           F + F    + F  +E+YS +  YL  +  FF  RW
Sbjct: 274 FWTNFEIAKVDFWESEVYSKYFDYLDKSGNFFYERW 309


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 310 ATN*LVKLI-RYKIFLFLLNSPLKSMRGYGEEKLWLKVSKS 429
           A++ LVKL+   KI+ +LL  P +S R     + W+KV +S
Sbjct: 109 ASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPES 149


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -3

Query: 419 TFNHSFSSPY-PLID--FSGEFKRNRNILYRIS-FTSQFVAFPLPFLRNEMYSCWLQYLP 252
           T   SFSS    +ID  +S E        Y +  F S F      F RNE Y  + + + 
Sbjct: 248 TVGLSFSSHLNAMIDSSYSAETSSMEGESYNMCHFWSNFEIANFKFFRNEQYENFFRTMD 307

Query: 251 LTPKFFISRW 222
            T  F+  RW
Sbjct: 308 ATGGFWTERW 317


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 GRFEIGIASELPPAYKKFWREWKVLKPAAVHFVP 290
           GR  IG A  L    K     W++LK  +VH+VP
Sbjct: 91  GRLHIGHA--LNKILKDIINRWQLLKGRSVHYVP 122


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 348  IPIPLKFPAEINEGIWGGEAVVKG 419
            I +PL   AEI +G+   EAV KG
Sbjct: 1890 IIVPLAAGAEIRQGLTASEAVAKG 1913


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 308 FPLPFLRNEMYSCWLQYLPLTPKFFI 231
           FP P LR +  + W++ L   P F I
Sbjct: 222 FPTPLLRQKAANAWIEVLSKLPYFHI 247


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 413 NHSFSSPYPLIDFSGEFKRNRNILYRISFTSQFVAFPLPFLRNEMYSC 270
           NH F+S   +  F  E KR  +I    +FT  F   P+  + +E   C
Sbjct: 120 NHEFASINRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFC 167


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 465 VPVLKRTVVRSEVLNTHLSVTVTDRTISLIND 560
           VP+LKR + +       L+V +TD    L+ D
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 420 FQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHYGF 572
           F +R +R R + H+W+ V      + + LN H+    +D    +++DH  F
Sbjct: 407 FMERKNRSRYL-HFWLVVEGLKESQDDPLNAHMIAPFSD----IVSDHTDF 452


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 405 AVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHL 518
           AV++    R++  +  PH   P++ R  +  E+L+  L
Sbjct: 17  AVIQSEIIREELEKHYPHLEFPIISRDTIGDEILSKAL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,972
Number of Sequences: 5004
Number of extensions: 55092
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)