Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d14
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   32   0.41 
SB_16473| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)                  29   2.9  
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_27600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)                        28   6.7  
SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_56008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 321  TGETYPIQNI--PIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVR 494
            TG+ Y   N+  PI +++P+E    I GGE   K +   +     V H W+P       R
Sbjct: 930  TGQVYDSINLCRPIDVQWPSE-QMRIKGGEKFWKDWHPEEGMVGVVVHRWLPNHPDPARR 988

Query: 495  SEVLNTHLSVTVTDRTI 545
            S V  T L V + D  +
Sbjct: 989  SHVNRTILLVKIEDHYV 1005


>SB_16473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH--YGFD 575
           R D RR+   YW+ V++  V+ +         +VT R +   +DH  Y FD
Sbjct: 7   RHDCRRKASPYWLAVMREDVLVNAATGRFQKNSVTFRWLDQTDDHRKYTFD 57


>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
          Length = 1463

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH--YGFD 575
           R DRRR    YW+ V+   V+           +VT R +   +DH  Y FD
Sbjct: 125 RHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDHLKYTFD 175


>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH--YGFD 575
           R DRRR    YW+ V+   V+           +VT R +   +DH  Y FD
Sbjct: 528 RHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDHLKYTFD 578


>SB_12711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 420 FQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           F  R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 78  FAVRHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 125


>SB_27600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 893

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH--YGFD 575
           R DRRR    YW+ V+   V+           +VT R +   +DH  Y FD
Sbjct: 503 RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQPDDHLKYTFD 553



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH--YGFD 575
           R +RRR+   YW+ V+   V+           +VT R +   +DH  Y FD
Sbjct: 650 RHNRRRKASPYWLAVMTEDVLVIAATGRFQRNSVTFRWLDQTHDHLKYTFD 700


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
 Frame = +3

Query: 381 NEGIWGGEAVVK---GFQKR-----DDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTD 536
           ++G+W   A  K   G ++R      DRRR    YW+ V+   V+           +VT 
Sbjct: 541 DKGVWERSATSKCRNGLRRRARLRKHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTF 600

Query: 537 RTISLINDH--YGFD 575
           R +   +DH  Y FD
Sbjct: 601 RWLDQPDDHLKYTFD 615


>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 54  IVTH*NSVNIFPQRFMLPKKL*SNSMASSRLQVTA 158
           I+T  N +N +P+R  L K +  NS+A+ R   T+
Sbjct: 304 IITPGNDLNSYPRRSRLKKPISRNSLATDRFSYTS 338


>SB_26368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 396 GGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           G   V K    R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 359 GSTRVQKIVAVRHDRRRDASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDH 414


>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
          Length = 673

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 503 RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 547


>SB_31525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 48  RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 92


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 81  RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 125


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429  RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
            R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 1413 RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 1457


>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 162 RHDRRREASPYWLAVMMEDVLVIAATGRFQKNSVTFRWLDQTDDH 206


>SB_56008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 429 RDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
           R DRRR    YW+ V+   V+           +VT R +   +DH
Sbjct: 81  RHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVTFRWLDQTDDH 125


>SB_53547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1381

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 426  KRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDH 563
            +R D RR+   YW+ V++  V+           +VT R +   +DH
Sbjct: 959  RRHDCRRKASPYWLAVMREDVLVIAATGRFQKNSVTFRWLDQTDDH 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,617
Number of Sequences: 59808
Number of extensions: 371839
Number of successful extensions: 1440
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)