BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d14 (604 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.0 DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 5.3 DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.3 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 22.2 bits (45), Expect = 4.0 Identities = 7/12 (58%), Positives = 10/12 (83%) Frame = -1 Query: 418 PLTTASPPHIPS 383 P TTA+PP +P+ Sbjct: 448 PATTAAPPQLPT 459 >DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 560 IINETNSSIRYSY*EMSIENFRSYYSSLQYWH 465 II+ +++ +YS N+ + Y LQY++ Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNTNYKKLQYYN 112 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 21.8 bits (44), Expect = 5.3 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -3 Query: 491 YYSSLQYWHPVVRYPASSII 432 YYS L W P Y +S I Sbjct: 136 YYSGLVVWQPPAVYKSSCSI 155 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 164,450 Number of Sequences: 438 Number of extensions: 3959 Number of successful extensions: 10 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17726685 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -