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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d13
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    29   0.50 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.5  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.5  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    25   4.7  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   4.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   6.2  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   6.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   6.2  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   8.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.2  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.2  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 180 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 359
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 360 AIN-YGRIKHPQE 395
           A   Y  I+H +E
Sbjct: 83  ASEYYYHIRHHEE 95


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 378 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 259
           F+ S  H+ R    R ++RME C    ++  Y+   T LD
Sbjct: 27  FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = +3

Query: 72  GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 248
           G   N    +Y ++  P    PY P  Y G    PF Q +   +  + FG  S+   +VA
Sbjct: 28  GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86

Query: 249 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 329
               +    + +  + P+ +    F Q
Sbjct: 87  DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 257 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 126
           ESS HG  SL  A +P T  V   L  W+ +F+    R+    Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 311 HGSILSTTRWQHGLLLCHQLWKN*APTRTTNTTKEQI 421
           HG+     R+QHG+++C     +  P   + T K+ I
Sbjct: 60  HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVI 96


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 92  SHIFRKARCTFLKINSSRYLPNTYFSFSER 3
           S + R A   FLK NSS+++P    + S R
Sbjct: 23  SLLARPANLQFLKTNSSKFVPQVTANVSRR 52


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 66  ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 170
           A   S+N A+G  P+ Y P    P  P  Y  +P+
Sbjct: 87  APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 342 CQRVVDRMEPCQPS*VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQV 163
           CQR  D +E          YV   + L+ K    +TE+   +      +S+ST  +    
Sbjct: 320 CQRATDIIERSM------NYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPEST 373

Query: 162 FHSSVQDRKAHVQQDYTP 109
             S+ + R  HVQ DY P
Sbjct: 374 A-STPKKRILHVQNDYVP 390


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 216 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 112
           R +NR    + D +E +V  ++ + RK   +QDYT
Sbjct: 88  RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 262 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 360
           EP G+G+I+T N  RL  L S  +N++   AAW  ++
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 232 LRLPWPELSVEPGGD 276
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 104 VITESHIFRKARCTFLKINSSRYLPNTYFSFSE 6
           +I   H F  A C F+  +S++ L N Y   +E
Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,909
Number of Sequences: 5004
Number of extensions: 44605
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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