BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d13 (492 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 29 0.50 SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 1.2 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.5 SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.5 SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 25 4.7 SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.7 SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.2 SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 6.2 SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.2 SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 8.2 SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 8.2 SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.2 >SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pombe|chr 2|||Manual Length = 96 Score = 28.7 bits (61), Expect = 0.50 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = +3 Query: 180 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 359 S ++ I ++ R P+ S +++ W +K K AP L+ +VF Y Sbjct: 25 SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82 Query: 360 AIN-YGRIKHPQE 395 A Y I+H +E Sbjct: 83 ASEYYYHIRHHEE 95 >SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosaccharomyces pombe|chr 3|||Manual Length = 441 Score = 27.5 bits (58), Expect = 1.2 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 378 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 259 F+ S H+ R R ++RME C ++ Y+ T LD Sbjct: 27 FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 25.8 bits (54), Expect = 3.5 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Frame = +3 Query: 72 GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 248 G N +Y ++ P PY P Y G PF Q + + + FG S+ +VA Sbjct: 28 GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86 Query: 249 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 329 + + + + P+ + F Q Sbjct: 87 DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113 >SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 234 Score = 25.8 bits (54), Expect = 3.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -2 Query: 257 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 126 ESS HG SL A +P T V L W+ +F+ R+ Y Sbjct: 24 ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64 >SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosaccharomyces pombe|chr 1|||Manual Length = 272 Score = 25.4 bits (53), Expect = 4.7 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +2 Query: 311 HGSILSTTRWQHGLLLCHQLWKN*APTRTTNTTKEQI 421 HG+ R+QHG+++C + P + T K+ I Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVI 96 >SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly scaffold protein Isu1|Schizosaccharomyces pombe|chr 1|||Manual Length = 192 Score = 25.4 bits (53), Expect = 4.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 92 SHIFRKARCTFLKINSSRYLPNTYFSFSER 3 S + R A FLK NSS+++P + S R Sbjct: 23 SLLARPANLQFLKTNSSKFVPQVTANVSRR 52 >SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 204 Score = 25.0 bits (52), Expect = 6.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 66 ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 170 A S+N A+G P+ Y P P P Y +P+ Sbjct: 87 APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121 >SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosaccharomyces pombe|chr 2|||Manual Length = 502 Score = 25.0 bits (52), Expect = 6.2 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -1 Query: 342 CQRVVDRMEPCQPS*VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQV 163 CQR D +E YV + L+ K +TE+ + +S+ST + Sbjct: 320 CQRATDIIERSM------NYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPEST 373 Query: 162 FHSSVQDRKAHVQQDYTP 109 S+ + R HVQ DY P Sbjct: 374 A-STPKKRILHVQNDYVP 390 >SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces pombe|chr 1|||Manual Length = 1159 Score = 25.0 bits (52), Expect = 6.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 216 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 112 R +NR + D +E +V ++ + RK +QDYT Sbjct: 88 RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122 >SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 464 Score = 24.6 bits (51), Expect = 8.2 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = +1 Query: 262 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 360 EP G+G+I+T N RL L S +N++ AAW ++ Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325 >SPCC61.05 |||S. pombe specific multicopy membrane protein family 1|Schizosaccharomyces pombe|chr 3|||Manual Length = 469 Score = 24.6 bits (51), Expect = 8.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 232 LRLPWPELSVEPGGD 276 +R+PWP L+VE GD Sbjct: 174 IRIPWPVLTVEFYGD 188 >SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 24.6 bits (51), Expect = 8.2 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -2 Query: 104 VITESHIFRKARCTFLKINSSRYLPNTYFSFSE 6 +I H F A C F+ +S++ L N Y +E Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,100,909 Number of Sequences: 5004 Number of extensions: 44605 Number of successful extensions: 121 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 192109570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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