Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12d13
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 29 0.50
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.5
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.5
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 25 4.7
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.2
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 6.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.2
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 8.2
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 8.2
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.2
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 28.7 bits (61), Expect = 0.50
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 180 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 359
S ++ I ++ R P+ S +++ W +K K AP L+ +VF Y
Sbjct: 25 SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82
Query: 360 AIN-YGRIKHPQE 395
A Y I+H +E
Sbjct: 83 ASEYYYHIRHHEE 95
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 378 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 259
F+ S H+ R R ++RME C ++ Y+ T LD
Sbjct: 27 FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 3.5
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +3
Query: 72 GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 248
G N +Y ++ P PY P Y G PF Q + + + FG S+ +VA
Sbjct: 28 GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86
Query: 249 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 329
+ + + + P+ + F Q
Sbjct: 87 DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 257 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 126
ESS HG SL A +P T V L W+ +F+ R+ Y
Sbjct: 24 ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 311 HGSILSTTRWQHGLLLCHQLWKN*APTRTTNTTKEQI 421
HG+ R+QHG+++C + P + T K+ I
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVI 96
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 92 SHIFRKARCTFLKINSSRYLPNTYFSFSER 3
S + R A FLK NSS+++P + S R
Sbjct: 23 SLLARPANLQFLKTNSSKFVPQVTANVSRR 52
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 66 ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 170
A S+N A+G P+ Y P P P Y +P+
Sbjct: 87 APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 6.2
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = -1
Query: 342 CQRVVDRMEPCQPS*VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQV 163
CQR D +E YV + L+ K +TE+ + +S+ST +
Sbjct: 320 CQRATDIIERSM------NYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPEST 373
Query: 162 FHSSVQDRKAHVQQDYTP 109
S+ + R HVQ DY P
Sbjct: 374 A-STPKKRILHVQNDYVP 390
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 216 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 112
R +NR + D +E +V ++ + RK +QDYT
Sbjct: 88 RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 8.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 262 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 360
EP G+G+I+T N RL L S +N++ AAW ++
Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 232 LRLPWPELSVEPGGD 276
+R+PWP L+VE GD
Sbjct: 174 IRIPWPVLTVEFYGD 188
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 8.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 104 VITESHIFRKARCTFLKINSSRYLPNTYFSFSE 6
+I H F A C F+ +S++ L N Y +E
Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,909
Number of Sequences: 5004
Number of extensions: 44605
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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