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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d13
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44...    30   0.88 
09_04_0385 + 17167174-17167440,17173321-17173962                       30   0.88 
02_05_0516 + 29694631-29695182                                         30   0.88 
01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331...    29   1.5  
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568     29   2.0  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    28   3.5  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   4.7  
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043...    28   4.7  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   6.2  
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782...    27   8.2  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     27   8.2  
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332...    27   8.2  
01_06_0208 - 27540077-27540992,27541310-27541497                       27   8.2  

>11_01_0058 +
           438000-438230,438847-438902,440003-440117,440314-440424,
           442331-442518,442957-443013,443109-443268,443368-443436,
           443580-443699
          Length = 368

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 96  GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 254
           GD+   Y P     Y P  Y+G+P  P + L+   +G        TPS V  A
Sbjct: 15  GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 281 LPSPPGSTESSGHGRRSLAAATEPRTD 201
           LP  P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 210 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 317
           W  RRSK+ PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>01_03_0045 +
           11929624-11929890,11930500-11930551,11932683-11933103,
           11933574-11934162
          Length = 442

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 RTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCTFLKINSS 42
           R+DF  + +   + R   VACR++    +R++ L +   +   RKAR T  K+  S
Sbjct: 304 RSDFRLIAIDLVASRSRQVACRLLSRRTTRVLCLAISLSNATHRKARATPPKVFES 359


>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
          Length = 605

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 297 VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQVFHSSVQDRKAHV 127
           ++   +A  T++  +L P   +  C D  T  FR AS D ++  +FH      K H+
Sbjct: 518 MIEQRLAYWTKVKCELPPMHHDGECPDHMTTIFRDASRDSIDRAMFHDVFLVIKTHL 574


>08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492,
            23711593-23711712,23712046-23712153,23712243-23712395,
            23712505-23712600,23712716-23712800,23713278-23714268,
            23714870-23714915,23715806-23715964,23716516-23716651,
            23716734-23716900,23717366-23717696,23717827-23718062,
            23718326-23718514
          Length = 1050

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +1

Query: 145  LHATMENLILHSVS*S*TKSVRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLA-WL- 318
            +   ME  +L  ++   +  +   V AA+ R   P + V  G +G   + NL ++A WL 
Sbjct: 811  VQTAMEEALLRILTPRRSIDILRDVHAAKERGK-PYVIVFVGVNGVGKSTNLAKVAYWLL 869

Query: 319  -HSINYSLAAWSSSMPSTMEELSTH 390
             H+++ SLAA  +     +E+L TH
Sbjct: 870  QHNLSVSLAACDTFRSGAVEQLRTH 894


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 205 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 324
           VR S A +R   P   + VE   DG+  T++L +L W HS
Sbjct: 34  VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72


>12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358,
            22906543-22907135,22907552-22908118,22908431-22908958,
            22909115-22909432,22910622-22910656,22910986-22911301
          Length = 1275

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 247  PELSVEPGGDGNISTYNLRRLAWLHSINYSLAAWSSSMPSTMEELSTH 390
            P +++   G+G ++   LRRL  LH++     +W  S+   ++ L TH
Sbjct: 1036 PSIAMRLQGNGVVAPRGLRRLTALHTLGVVDISWQPSILQDIKRL-TH 1082


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 126 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 305
           +HG         KPD P   L LN+ GS+    SK     +   + AWW + ++  +   
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690

Query: 306 VG 311
            G
Sbjct: 691 TG 692


>10_05_0011 -
           7822847-7822880,7823653-7823754,7823859-7824106,
           7824195-7824240,7824368-7825984,7826673-7826797,
           7826915-7829083
          Length = 1446

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 281 LPSPPGSTESSGHGRRS 231
           LPS PGST SSG+  RS
Sbjct: 847 LPSTPGSTTSSGYPSRS 863


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 159 GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 272
           G P+   S    +     FGR S  KTP ++   F+R WW
Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208


>04_03_0743 +
           19231835-19232204,19232889-19233061,19233200-19233297,
           19233970-19234107,19234266-19234455,19234875-19235007,
           19235095-19236029
          Length = 678

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 415 FFSGICSSCGCLILP*L--MA*KKTMLPTSS**NGAMPTFLGCTYLCCHL 272
           FFSG+  SCG    P L   A K T     S      PT++GC  +C H+
Sbjct: 236 FFSGVGDSCGFDNFPSLGLAAFKNTFYFDFS------PTYIGCGLICPHI 279


>01_06_0208 - 27540077-27540992,27541310-27541497
          Length = 367

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 228 KTPSAVAGAFSRAWWRW 278
           + P   AG+F   WWRW
Sbjct: 275 RAPPLSAGSFLTGWWRW 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,231
Number of Sequences: 37544
Number of extensions: 298808
Number of successful extensions: 986
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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