BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d13 (492 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 30 0.88 09_04_0385 + 17167174-17167440,17173321-17173962 30 0.88 02_05_0516 + 29694631-29695182 30 0.88 01_03_0045 + 11929624-11929890,11930500-11930551,11932683-119331... 29 1.5 11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 29 2.0 08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 3.5 12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163... 28 4.7 12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 4.7 12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 6.2 10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 8.2 04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 27 8.2 04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332... 27 8.2 01_06_0208 - 27540077-27540992,27541310-27541497 27 8.2 >11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-440424, 442331-442518,442957-443013,443109-443268,443368-443436, 443580-443699 Length = 368 Score = 30.3 bits (65), Expect = 0.88 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +3 Query: 96 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 254 GD+ Y P Y P Y+G+P P + L+ +G TPS V A Sbjct: 15 GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63 >09_04_0385 + 17167174-17167440,17173321-17173962 Length = 302 Score = 30.3 bits (65), Expect = 0.88 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 Query: 281 LPSPPGSTESSGHGRRSLAAATEPRTD 201 LP P +T SSG+ R S +A++ PR D Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172 >02_05_0516 + 29694631-29695182 Length = 183 Score = 30.3 bits (65), Expect = 0.88 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +3 Query: 210 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 317 W RRSK+ PS A AG + WW W ++ KK G A Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105 >01_03_0045 + 11929624-11929890,11930500-11930551,11932683-11933103, 11933574-11934162 Length = 442 Score = 29.5 bits (63), Expect = 1.5 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -2 Query: 209 RTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCTFLKINSS 42 R+DF + + + R VACR++ +R++ L + + RKAR T K+ S Sbjct: 304 RSDFRLIAIDLVASRSRQVACRLLSRRTTRVLCLAISLSNATHRKARATPPKVFES 359 >11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 Length = 605 Score = 29.1 bits (62), Expect = 2.0 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -1 Query: 297 VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQVFHSSVQDRKAHV 127 ++ +A T++ +L P + C D T FR AS D ++ +FH K H+ Sbjct: 518 MIEQRLAYWTKVKCELPPMHHDGECPDHMTTIFRDASRDSIDRAMFHDVFLVIKTHL 574 >08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492, 23711593-23711712,23712046-23712153,23712243-23712395, 23712505-23712600,23712716-23712800,23713278-23714268, 23714870-23714915,23715806-23715964,23716516-23716651, 23716734-23716900,23717366-23717696,23717827-23718062, 23718326-23718514 Length = 1050 Score = 28.3 bits (60), Expect = 3.5 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = +1 Query: 145 LHATMENLILHSVS*S*TKSVRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLA-WL- 318 + ME +L ++ + + V AA+ R P + V G +G + NL ++A WL Sbjct: 811 VQTAMEEALLRILTPRRSIDILRDVHAAKERGK-PYVIVFVGVNGVGKSTNLAKVAYWLL 869 Query: 319 -HSINYSLAAWSSSMPSTMEELSTH 390 H+++ SLAA + +E+L TH Sbjct: 870 QHNLSVSLAACDTFRSGAVEQLRTH 894 >12_02_0874 + 23915303-23915543,23915630-23915713,23915797-23916312, 23916426-23916482,23916630-23916802,23916886-23917014, 23917102-23917296,23917381-23917503,23918171-23918284 Length = 543 Score = 27.9 bits (59), Expect = 4.7 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 205 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 324 VR S A +R P + VE DG+ T++L +L W HS Sbjct: 34 VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72 >12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358, 22906543-22907135,22907552-22908118,22908431-22908958, 22909115-22909432,22910622-22910656,22910986-22911301 Length = 1275 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +1 Query: 247 PELSVEPGGDGNISTYNLRRLAWLHSINYSLAAWSSSMPSTMEELSTH 390 P +++ G+G ++ LRRL LH++ +W S+ ++ L TH Sbjct: 1036 PSIAMRLQGNGVVAPRGLRRLTALHTLGVVDISWQPSILQDIKRL-TH 1082 >12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108, 23192186-23193097,23193190-23193346,23193540-23193694, 23194667-23194819,23195334-23195627,23195711-23195896, 23196062-23196662,23196868-23196992,23197101-23197197, 23197299-23197411,23198129-23198233 Length = 1176 Score = 27.5 bits (58), Expect = 6.2 Identities = 17/62 (27%), Positives = 26/62 (41%) Frame = +3 Query: 126 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 305 +HG KPD P L LN+ GS+ SK + + AWW + ++ + Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690 Query: 306 VG 311 G Sbjct: 691 TG 692 >10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106, 7824195-7824240,7824368-7825984,7826673-7826797, 7826915-7829083 Length = 1446 Score = 27.1 bits (57), Expect = 8.2 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 281 LPSPPGSTESSGHGRRS 231 LPS PGST SSG+ RS Sbjct: 847 LPSTPGSTTSSGYPSRS 863 >04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 Length = 566 Score = 27.1 bits (57), Expect = 8.2 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +3 Query: 159 GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 272 G P+ S + FGR S KTP ++ F+R WW Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208 >04_03_0743 + 19231835-19232204,19232889-19233061,19233200-19233297, 19233970-19234107,19234266-19234455,19234875-19235007, 19235095-19236029 Length = 678 Score = 27.1 bits (57), Expect = 8.2 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -3 Query: 415 FFSGICSSCGCLILP*L--MA*KKTMLPTSS**NGAMPTFLGCTYLCCHL 272 FFSG+ SCG P L A K T S PT++GC +C H+ Sbjct: 236 FFSGVGDSCGFDNFPSLGLAAFKNTFYFDFS------PTYIGCGLICPHI 279 >01_06_0208 - 27540077-27540992,27541310-27541497 Length = 367 Score = 27.1 bits (57), Expect = 8.2 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +3 Query: 228 KTPSAVAGAFSRAWWRW 278 + P AG+F WWRW Sbjct: 275 RAPPLSAGSFLTGWWRW 291 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,573,231 Number of Sequences: 37544 Number of extensions: 298808 Number of successful extensions: 986 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 985 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1023611560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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