BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d13 (492 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04 SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 31 0.68 SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.1 SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29) 28 3.6 SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7) 27 6.4 SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) 27 8.4 SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 27 8.4 SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 27 8.4 >SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 72 Score = 40.7 bits (91), Expect = 6e-04 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = +3 Query: 171 TPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMV 350 T F + KL G + R + + G SR W ++ KYV K M PF+ + + Sbjct: 2 TSFGETKLKNAGDYVVRNASLENMWRG-MSRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60 Query: 351 FFYAINYGRIK 383 YAI Y +K Sbjct: 61 LNYAIEYNHLK 71 >SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) Length = 1050 Score = 30.7 bits (66), Expect = 0.68 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 207 SWFGRRSKTPSAVAGAFSRAWWRWQHKYV 293 SW RRS S FS +WRW H++V Sbjct: 489 SW-SRRSAATSLDTKTFSIEYWRWHHRFV 516 >SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 864 Score = 29.1 bits (62), Expect = 2.1 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +3 Query: 219 RRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFY 326 RRS S FS +WRW H++ + FY Sbjct: 785 RRSAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820 >SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29) Length = 594 Score = 28.3 bits (60), Expect = 3.6 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 168 DTPFSQLKLNEIGSWFGR 221 D+P +QL LNEI SWF R Sbjct: 423 DSPDTQLTLNEIYSWFTR 440 >SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7) Length = 493 Score = 27.5 bits (58), Expect = 6.4 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 78 SKNMAFGDYPKEYNPAVH-GPYDPARYYGKPDTPFSQLKLNEIGS 209 SK + G +PK NPA H P +PA + KP P + K G+ Sbjct: 246 SKALETGTHPKPTNPATHPKPTNPAT-HPKPTNPGTNPKPTNPGT 289 >SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) Length = 693 Score = 27.1 bits (57), Expect = 8.4 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 60 KSASGFSKNM-AFGDYPKEYNPAVHGPYDPARYYGK 164 +S SG K + A G E + HGPYDP YGK Sbjct: 69 QSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPYGK 104 >SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) Length = 1866 Score = 27.1 bits (57), Expect = 8.4 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 60 KSASGFSKNM-AFGDYPKEYNPAVHGPYDPARYYGK 164 +S SG K + A G E + HGPYDP YGK Sbjct: 1624 QSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPYGK 1659 >SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) Length = 337 Score = 27.1 bits (57), Expect = 8.4 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +3 Query: 135 PYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWW 272 P P R Y PD+PF+ +L S R+S +P+ + +W Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS-RSRKSSSPTTTQTTMATIYW 303 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,564,617 Number of Sequences: 59808 Number of extensions: 338311 Number of successful extensions: 789 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 789 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1050596726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -