Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d12
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    170   6e-43
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         169   1e-42
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   167   7e-42
At2g35200.1 68415.m04317 expressed protein                             30   1.1  
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.6  
At3g43870.1 68416.m04696 hypothetical protein                          29   3.4  
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein...    28   4.5  

>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  170 bits (414), Expect = 6e-43
 Identities = 71/149 (47%), Positives = 105/149 (70%)
 Frame = +1

Query: 34  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 213
           +L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++   
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64

Query: 214 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 393
                      NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 394 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 480
           IIK   + A+ C+R   KQFHNS I+FPL
Sbjct: 125 IIKTATVPASLCKRESTKQFHNSKIKFPL 153


>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  169 bits (412), Expect = 1e-42
 Identities = 72/149 (48%), Positives = 103/149 (69%)
 Frame = +1

Query: 34  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 213
           +  +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 214 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 393
                      NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQ
Sbjct: 65  EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124

Query: 394 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 480
           IIK   + A  C+R   KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  167 bits (405), Expect = 7e-42
 Identities = 70/149 (46%), Positives = 101/149 (67%)
 Frame = +1

Query: 34  QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 213
           +  +Y+V+GR LP+EN+  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64

Query: 214 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 393
                      N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQ
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124

Query: 394 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 480
           IIK   + A  C+R   KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPL 153


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 112 IFSPDPIVAKSRFWYFLRQLKKFKKT 189
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 442 VKQFHNSTIRFPLPKRVHHYK 504
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At3g43870.1 68416.m04696 hypothetical protein 
          Length = 187

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 170 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSDGSLRPITSYSLNCPLAFI 18
           SC ++++  D+ TIG      +  KG +     G +R  T Y LN  + F+
Sbjct: 4   SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFL 54


>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to GB:AAD22369, NAM stands for No Apicla
           Meristem
          Length = 425

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 25  AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 192
           AKG   ++ +   +LPS +EP PP    R F  D  V+ +  W   R  KK   TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,207
Number of Sequences: 28952
Number of extensions: 303405
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)