Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d09
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 542  LLGSWYIRMTLPSPFSFSNQSRKSVKADISDFVLRIL*ETI 420
            LL S+YI+  L   + FS Q  +   A+  DFV +I  ET+
Sbjct: 923  LLESFYIQFPLLELYKFSCQQLQDYIAEGKDFVTKIEEETL 963


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 274  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG 399
            +D   Q+  +  + ++ + I    DL P     HNV+++T+G
Sbjct: 1460 VDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIG 1501


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 281 SSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVT 132
           +S S+ P  + + P+    P   PT  S     T+   S S+P+T T VT
Sbjct: 395 TSTSIPPTGNSTTPVTPTVP---PTSSSTPLTTTNCTTSTSVPYTSTPVT 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,037
Number of Sequences: 5004
Number of extensions: 56791
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)