Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d09
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     29   3.5  
SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +1

Query: 34   KTFVVHHTGLRGSYFVYQHLFINEFAN*ALMAMVTEVKV----NGSEMEANTEVPPALAE 201
            K F++H +  RG + V+Q++ IN      LMA +T  +     N S+ +  +EV   L +
Sbjct: 857  KEFILHASKRRGDFPVFQNVPINTKEGGVLMATITGSEALRIENQSDEDTRSEVMATLRQ 916

Query: 202  KPVGLP-PGKYSLIGWDMD 255
                +P P +     W  D
Sbjct: 917  LYGVIPEPTEMFYARWSKD 935


>SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +1

Query: 388 VTVGRYRMLKDMVSHKILKTKSEI-----SALTDFLDWLEK--EKGDGSVILIYHE 534
           V +  Y  + D V  + LK K+ I       ++++LDWLE+  EKGD ++  I  E
Sbjct: 29  VKIKPYEAVLDDVEKEGLKPKANIWIRDAVVISEYLDWLEREVEKGDNNLTEITGE 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,241,029
Number of Sequences: 59808
Number of extensions: 420514
Number of successful extensions: 1018
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)