Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d09
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    31   0.70 
At5g56350.1 68418.m07033 pyruvate kinase, putative similar to py...    30   1.2  
At4g26390.1 68417.m03797 pyruvate kinase, putative identical to ...    30   1.6  
At3g32260.1 68416.m04113 hypothetical protein                          29   2.1  
At3g04420.1 68416.m00468 no apical meristem (NAM) family protein...    29   2.8  
At5g28615.1 68418.m03493 hypothetical protein                          28   4.9  
At2g17960.1 68415.m02082 hypothetical protein                          28   4.9  
At2g20240.1 68415.m02365 expressed protein                             28   6.5  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    27   8.6  

>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +1

Query: 310 KQTYSQYIMPYGDLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALTDFLDWL 489
           ++  +++ +  G++    R +++   +     ++LK++ S ++ K KSE +ALTD    L
Sbjct: 18  REKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTS-EVNKLKSEYTALTDESREL 76

Query: 490 EKEKGD 507
            +EK D
Sbjct: 77  TQEKND 82


>At5g56350.1 68418.m07033 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 498

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 639 QGIAVSESCDY*IKTIQQVVPCQSLKKHCRTEPPGFVVYKNDTTISFLFL 490
           QG  ++ S DY +K  +  + C S KK      PG V+   D TIS L L
Sbjct: 93  QGQEITISTDYDLKGDENTI-CMSYKKLAVDVNPGMVILCADGTISLLVL 141


>At4g26390.1 68417.m03797 pyruvate kinase, putative identical to
           probable pyruvate kinase, cytosolic isozyme (EC
           2.7.1.40) [Arabidopsis thaliana] SWISS-PROT:O65595
          Length = 497

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 639 QGIAVSESCDY*IKTIQQVVPCQSLKKHCRTEPPGFVVYKNDTTISFLFL 490
           QG  ++ S DY +K  ++ + C S KK  +   PG V+   D TIS   L
Sbjct: 92  QGQEITISTDYDLKGDEKTI-CMSYKKLAQDVNPGMVILCADGTISLKVL 140


>At3g32260.1 68416.m04113 hypothetical protein
          Length = 309

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 121 LMAMVTEV-KVNGSEMEANTEVPPALAEKPVGLPPGKYSLIGWDMDTTGRRLIDEICQIA 297
           ++  + +V +VN  + +    V  +   + +GLPPG+  LI  D +    RL   IC + 
Sbjct: 85  VLGQIVDVWEVNSVKAKGKDTVKLSFELQDLGLPPGREDLIHVDCEVKTNRL--RICFVE 142

Query: 298 AYTPKQTYSQY 330
           A  PK  Y  Y
Sbjct: 143 A-MPKWYYIAY 152


>At3g04420.1 68416.m00468 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 342

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 436 ILKTKSEISALTDFLDWLEKEKGDGSVILIYHEPRRFSPTMLLEALT 576
           IL+ + EI      + ++ KE G      + HE   FSPT ++   T
Sbjct: 97  ILRNRQEIGEKKVLMFYMSKELGGSKSDWVMHEYHAFSPTQMMMTYT 143


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 314 CFGVYAAIWHISSISLRPVVSMSQPIREYFPG 219
           C G+ A  WH     L P++ ++ P+   F G
Sbjct: 4   CSGITAKFWHDDWTGLGPLIDLTAPLGPQFTG 35


>At2g17960.1 68415.m02082 hypothetical protein
          Length = 121

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 406 RMLKDMVSHKILKTKSEISALTDFLDWLEKE 498
           R L+  VSH +L TK + +    ++DW+E +
Sbjct: 84  RKLRSPVSHCMLVTKCQTTLQIGYIDWMESK 114


>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 602 LKRSNRSYLVK--ASRSIVGLNLLGSWYIRMTLPSPFSFSNQSRKSVKADIS 453
           L RSN  YLV    +  I+  +   SW       SPFS S+ SR S   D S
Sbjct: 285 LNRSNYEYLVGNITNSEIMSPSSRHSWDCANKFESPFSSSSLSRVSFSPDSS 336


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 412 LKDMVSHKILKTKSEISALTDFLDWLEKE----KGDGSVILIYHEPRRFSPTMLLEALTR 579
           + D++   +    S++  +  F+DWL+KE      + +V+  +  P + + T L EA   
Sbjct: 344 INDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADT-LQEAAVE 402

Query: 580 YDLLDRFNSIVAGFTD 627
           Y  L +    ++ ++D
Sbjct: 403 YRELKKLEKELSSYSD 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,576
Number of Sequences: 28952
Number of extensions: 300382
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)