BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d07 (645 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 28 0.089 AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 26 0.36 DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 24 1.4 AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 3.3 >DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 27.9 bits (59), Expect = 0.089 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 287 YNDKIFIYNNFYNSXMXYKKYIL 355 YN+K NN YN + YK YI+ Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYII 122 >AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex determiner protein. Length = 413 Score = 25.8 bits (54), Expect = 0.36 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +2 Query: 287 YNDKIFIYN-NFYNSXMXYKKYIL 355 YN+ + YN N YN + YK YI+ Sbjct: 324 YNNNNYKYNYNNYNKKLYYKNYII 347 >DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex determiner protein. Length = 178 Score = 23.8 bits (49), Expect = 1.4 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Frame = +2 Query: 290 NDKIFIYNNF--YNSXMXYKKYIL 355 N K YNN+ YN + YK YI+ Sbjct: 88 NYKYSNYNNYNNYNKKLYYKNYII 111 >AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex determiner protein. Length = 419 Score = 22.6 bits (46), Expect = 3.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 308 YNNFYNSXMXYKKYIL 355 YNN YN + YK YI+ Sbjct: 338 YNN-YNKKLYYKNYII 352 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 47,236 Number of Sequences: 438 Number of extensions: 617 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 19438227 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -