Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d04
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    29   0.45 
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.2  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   5.5  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   7.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.7  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +1

Query: 205 SMSKLKDFSCAFHGNENMANQKLIYPAATRNQEPILQVLKRFVTYDCAED 354
           S++ LKD +  FH N  +   K     A+  +EPILQ L   +TY CA D
Sbjct: 309 SVNSLKDVA-KFHCNITLDKSKRD-DFASLEKEPILQKLNELITY-CAHD 355


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -1

Query: 436 ILYLENEVQSVLNVVLSLRLPLKKMDYHLLHNH 338
           +L+L +++QS L   LS +  L ++DY L+HN+
Sbjct: 350 LLFLRHKLQSSL---LSPKQDLSQVDYKLVHNY 379


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 300 LVPCCCWIYQLLICH 256
           +V  CCW +  L+CH
Sbjct: 466 IVANCCWAFMNLVCH 480


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 352 DDSPFFLEVASGSGQHLAHFAP 417
           DD   F+E  +GSG+ LA+  P
Sbjct: 177 DDKDAFIEAQTGSGKTLAYLLP 198


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 232  CAFHGNENMANQKLIYPAATRNQEPILQVLKRFV 333
            C ++GN+ ++    I P       P+L  LKR V
Sbjct: 1388 CYYNGNQKLSYDTSIVPRGCYQLGPVLSWLKRCV 1421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,786
Number of Sequences: 5004
Number of extensions: 52360
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)