Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d04
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422...    24   6.8  

>11_01_0534 +
           4227838-4228001,4229034-4229151,4229593-4229752,
           4229901-4230027,4230899-4231037,4231119-4231301,
           4231395-4231464,4231550-4231662
          Length = 357

 Score = 24.2 bits (50), Expect(2) = 6.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 499 PTKNILLPIQLDICTDLVHYGFS 567
           PTKN L+P    ICT L H G S
Sbjct: 102 PTKNKLVPCANSICTAL-HSGSS 123



 Score = 22.2 bits (45), Expect(2) = 6.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 328 FVTYDCAEDDSPFFLEVASGS 390
           +VT +  +   P+FL+V +GS
Sbjct: 58  YVTMNIGDPAKPYFLDVDTGS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,515
Number of Sequences: 37544
Number of extensions: 274394
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)