BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12d04 (661 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422... 24 6.8 >11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752, 4229901-4230027,4230899-4231037,4231119-4231301, 4231395-4231464,4231550-4231662 Length = 357 Score = 24.2 bits (50), Expect(2) = 6.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 499 PTKNILLPIQLDICTDLVHYGFS 567 PTKN L+P ICT L H G S Sbjct: 102 PTKNKLVPCANSICTAL-HSGSS 123 Score = 22.2 bits (45), Expect(2) = 6.8 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +1 Query: 328 FVTYDCAEDDSPFFLEVASGS 390 +VT + + P+FL+V +GS Sbjct: 58 YVTMNIGDPAKPYFLDVDTGS 78 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,601,515 Number of Sequences: 37544 Number of extensions: 274394 Number of successful extensions: 566 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 566 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1655832080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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