Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d04
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  31   0.83 
SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)          29   3.4  
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)                    29   3.4  

>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 256 MANQK-LIYPAATRNQEPILQVLKRFVTYDCAEDDSPFFLEVAS--GSGQHLAHFAPHFP 426
           M NQ     P+     EP+ Q+LK+   + C E     F  +     S + LAH+ P+ P
Sbjct: 501 MVNQMGKFLPSLANLNEPLRQLLKKENEWACGESQQQSFTRIKEELTSSRSLAHYDPNRP 560

Query: 427 NI 432
            I
Sbjct: 561 TI 562


>SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)
          Length = 361

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 625 IHKD-LXESYLHYRHNLYFLLKTHNELNLYIYPIVLV 518
           +H D L + ++ Y+H+LYFL+      NLY    +LV
Sbjct: 199 MHFDGLAKFFVRYQHHLYFLIMGLARFNLYAQSFLLV 235


>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
          Length = 757

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 162 NFELHFHVFLILKSYLSD 109
           NF+LHFH FL LKSYL +
Sbjct: 348 NFDLHFHDFL-LKSYLKE 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,195
Number of Sequences: 59808
Number of extensions: 344506
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)