Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12d04
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023830-3|CAE17985.1|  204|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL023830-3|CAE17985.1|  204|Caenorhabditis elegans Hypothetical
           protein Y26E6A.3 protein.
          Length = 204

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
 Frame = +1

Query: 280 PAATRNQEPILQVLKRFVTYDCAEDDSPFFLEVASGSGQHLAHFAPHFPNIKFQPTEFDE 459
           PAA  N++ IL+VL+RF T            E+ASG+GQH+ HFA   P++ FQPTE + 
Sbjct: 5   PAAESNKDVILEVLRRFAT------SGKKVFELASGTGQHMEHFARALPDVTFQPTEVNG 58

Query: 460 TLLGSIKYYATQCPTKNILLPIQLDICTDLVHYG----FSEESIDYVYNANMIXISPYEC 627
             L SI  Y  Q    N+ +P+ +D+      +     F    +D V N NMI I     
Sbjct: 59  RYLHSIVSYLDQSQFPNVRIPLFIDVAKPFNQWALPADFGPHMVDIVLNINMIHICSTAA 118

Query: 628 TIGLFKNA 651
             GLF++A
Sbjct: 119 VKGLFQSA 126


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 413 HLIFQI*NFSQQNLTKPF*EALNIMQRNVQPKIY 514
           HLIF + N  Q +L   F E +N   +N++ K+Y
Sbjct: 299 HLIFLLSNTDQLDLRTTFGEEMNYSDKNIESKVY 332


>Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical
           protein F33E2.3 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 217 LKDFSCAFHGNE--NMANQKLIYPAATRNQEPILQVLKRFVTYDCAED 354
           L D SC  +G    ++A +  +    + N EPI Q  K F+TY    D
Sbjct: 259 LNDVSCTHNGGSGVSLAAENFLAGGDSFNFEPIDQEAKGFLTYHLISD 306


>Z75543-2|CAA99870.1|  529|Caenorhabditis elegans Hypothetical
           protein K01D12.2 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 379 ASGSGQHLAHFAPHFPN-IKFQPTEFDETLLGSIKYYATQCPTKNILLPIQ 528
           A GS QH  H  PH    + F P      ++G+    A QC + N  +PIQ
Sbjct: 68  AHGSQQH--HIFPHQQGQMHFNPIH-PHGIIGACSNSAQQCSSTNSYIPIQ 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,884
Number of Sequences: 27780
Number of extensions: 283933
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)