Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12d02
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 235 2e-62
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 235 2e-62
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 91 8e-19
Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical p... 31 0.52
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 28 4.8
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 28 4.8
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 28 4.8
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 28 4.8
Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical pr... 28 6.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 8.4
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 27 8.4
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 8.4
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 8.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 8.4
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 235 bits (575), Expect = 2e-62
Identities = 106/179 (59%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 454 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDXEKVESG 630
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTG 189
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 235 bits (575), Expect = 2e-62
Identities = 106/179 (59%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 454 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDXEKVESG 630
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTG 189
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 90.6 bits (215), Expect = 8e-19
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Frame = +1
Query: 229 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 399
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 400 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 549
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 550 YTHLYTLIVKPDNTYEVLIDXEKVESGD 633
THL+TL+VKP Y V +D + + G+
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGN 253
>Z83116-11|CAM84819.1| 278|Caenorhabditis elegans Hypothetical
protein M01B2.12 protein.
Length = 278
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 516 EVVLTLVTEDYVYLLGSWTTDVRAEHNLIWSLSVHVLLLQFAVKDLEVSASTVNVLF 346
E+ + +V+ D+ LL W+ +VRAE L ++ L F +D + S + L+
Sbjct: 36 EIRIQMVSADFGILLAEWSKEVRAEFTSAELLELYKKCLNFVKEDNKPSMVEITQLY 92
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 405 LLQFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 250
L + ++K+LE + L F S L D G + + E+T E IE RI G
Sbjct: 233 LQKLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -3
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 254 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 313
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 314 YSSDSNSNSNQSPPG 328
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -3
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -3
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = -3
Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
+ GS K PAV N NS+ Q+ HE ++ T +N T T
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380
Query: 53 FIFDSQYHLLQQKTG 9
+ DS + Q G
Sbjct: 381 YSSDSNSNSNQSPPG 395
>Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical
protein C34C6.5a protein.
Length = 473
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 320 WSSSSLSNMNKTLTVEADTSRSLTANWSRRTCTERLHM--RLCSALTSVVQE 469
W SS L+ + T+ + T RS+ + S+ TCTE HM +C S +E
Sbjct: 15 WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HMGGTICCCCRSDAEE 65
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDXEKVES 627
K I+K++ C+D THL L D+TY V ++ E+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -3
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -3
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -3
Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523
Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
T + S +SS N +++ S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDXEKVES 627
K I+K++ C+D THL L D+TY V ++ E+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,919
Number of Sequences: 27780
Number of extensions: 362776
Number of successful extensions: 1211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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