Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c23
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 180 1e-46
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 180 1e-46
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 124 8e-30
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 77 2e-15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 69 3e-13
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 59 4e-10
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 56 3e-09
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 37 0.002
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.014
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.014
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.014
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 31 0.13
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 0.71
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 0.94
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 1.6
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 27 2.2
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 3.8
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 5.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 6.7
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 6.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.8
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 8.8
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 8.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 180 bits (437), Expect = 1e-46
Identities = 93/147 (63%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Frame = +1
Query: 76 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 256 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 432
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 433 TAALRVTDGALXXXXXXXXXXXQTETV 513
TAALRVTDGAL QTETV
Sbjct: 116 TAALRVTDGALVVVDTIEGVCVQTETV 142
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 180 bits (437), Expect = 1e-46
Identities = 93/147 (63%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Frame = +1
Query: 76 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 256 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEV 432
DEQ+R +TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEV
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEV 115
Query: 433 TAALRVTDGALXXXXXXXXXXXQTETV 513
TAALRVTDGAL QTETV
Sbjct: 116 TAALRVTDGALVVVDTIEGVCVQTETV 142
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 124 bits (299), Expect = 8e-30
Identities = 67/140 (47%), Positives = 93/140 (66%)
Frame = +1
Query: 94 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 273
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 274 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 453
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 454 DGALXXXXXXXXXXXQTETV 513
DGA QT TV
Sbjct: 119 DGAFVLVDAVEGVCSQTITV 138
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 76.6 bits (180), Expect = 2e-15
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Frame = +1
Query: 82 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF-- 243
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I G+
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGA 100
Query: 244 -TDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 420
D + E+++ ITI+S A +E + N Q+ EK + IN+ID+PGH+DF
Sbjct: 101 KMDFMELEREKGITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDF 158
Query: 421 SSEVTAALRVTDGALXXXXXXXXXXXQTETV 513
+ EV ALRV DGA+ QT TV
Sbjct: 159 TIEVERALRVLDGAVLVLCAVSGVQSQTITV 189
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 69.3 bits (162), Expect = 3e-13
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = +1
Query: 100 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 279
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 280 TIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 459
T+K+ SM + + +L+NLID+PGHVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 460 AL 465
+
Sbjct: 151 CI 152
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 58.8 bits (136), Expect = 4e-10
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Frame = +1
Query: 127 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITIKSTA 297
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R ITI S A
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITINSAA 85
Query: 298 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 477
IS T +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 86 IS------------FTWRNQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIID 125
Query: 478 XXXXXXXQTETV 513
QT+ V
Sbjct: 126 GSAGVEAQTKVV 137
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 56.0 bits (129), Expect = 3e-09
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +1
Query: 106 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 282
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 283 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 462
IKST +++ D + K+ F ID+PGHVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 463 L 465
+
Sbjct: 237 V 237
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 36.7 bits (81), Expect = 0.002
Identities = 31/116 (26%), Positives = 53/116 (45%)
Frame = +1
Query: 118 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 297
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 298 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 465
+ +E + + P + ++ N+I +D + V +A TDG +
Sbjct: 109 VE--YETANRHYAHVDCPGHAD-----YIKNMITGAATMDGAIIVVSA---TDGQM 154
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.13
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +1
Query: 91 VDEIRGMMDKKR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 267
+DE M D+ R I + K+ +T L S+ ++A A R+ D + +
Sbjct: 435 IDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGE 494
Query: 268 DRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 438
+ I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 495 N--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.23
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 306
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 307 FFELEEK 327
FE K
Sbjct: 232 AFEAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 0.71
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +1
Query: 136 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 315
N+ I HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 316 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 465
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 0.94
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 512 TVSVCTHTPD-TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336
T + C+ P+ T ST + +V+ S + ++ ST P ++ + S S V +
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-----SSSVHS 629
Query: 335 TKSFSSSSKNIEMAV 291
+ + SSSS++ M++
Sbjct: 630 SSAHSSSSRSSSMSL 644
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 512 TVSVCTHTPDTQSTTTR-APSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336
T S + +P + STTT +PS + S++ +S S+ S S S S +
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195
Query: 335 TKSFSSSSKNIEMAV 291
+ S SSSS + + +
Sbjct: 196 SSSSSSSSSSSSVPI 210
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 512 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNT 333
TVS + + T S+++ +PS + + TS S+ S S S S ++
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 332 KSFSSSSKN 306
S SSSS +
Sbjct: 186 SSSSSSSSS 194
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 425 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVMQRSCSSLRV 249
EE + P + K KK S F+ T +S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 132 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQLPYASNGVRFEKG 1
DIPL + P D + RE + RW + +L + Y ++ F G
Sbjct: 102 DIPLRLIQPYDPLSRETVYMRWKELAMLDKTVDYQNHNQSFPFG 145
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 377 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 270
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 132 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 37
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 127 SASCPSSHGSRLP*NSPF*MVYDFCSIK 44
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 161 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 268
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 136 NMSVIAHVDHGKSTLTDSL 192
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 55 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 213
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 338 NTKSFSSSSKNIEMAVDLM 282
+ KSFSS+S NI+ +DL+
Sbjct: 92 SAKSFSSTSSNIDSNLDLL 110
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 8.8
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -3
Query: 392 KLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQRSC---SSLRVSVKRVSPAL 222
KL+K L +W G ++ + S + DL +M R C + S +R A
Sbjct: 483 KLLK--LQLIIKWGGEFTHSARYQSKDLGEQFHKDLYIMNRDCLKDVEIYTSSERRVSAS 540
Query: 221 APAMIPALETNESVRVDL 168
A A E++ DL
Sbjct: 541 AEIFAMAFLEQETIPSDL 558
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 419 KSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAV 291
K+ GESI +I+ P +S + + TKS S S+N+E ++
Sbjct: 450 KAKLDGESI-IIEHP--TYSAFQQIIDRTKSLSFESQNLEQSL 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,687
Number of Sequences: 5004
Number of extensions: 41638
Number of successful extensions: 165
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -