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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c23
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   225   1e-59
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   5e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     44   6e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.18 
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.42 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   3.0  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)             27   9.1  
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               27   9.1  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  225 bits (551), Expect = 1e-59
 Identities = 112/145 (77%), Positives = 122/145 (84%)
 Frame = +1

Query: 79  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 258
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 259 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 438
           DEQDRCITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61  DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118

Query: 439 ALRVTDGALXXXXXXXXXXXQTETV 513
           ALRVTDGAL           QTETV
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETV 143


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 48.8 bits (111), Expect(2) = 5e-08
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +1

Query: 130  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 291
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993



 Score = 25.4 bits (53), Expect(2) = 5e-08
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 394  IDSPGHVDFSSEVTAALRVTDGAL 465
            + + GHVDFS EV+ +L    G +
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVV 2014


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 35/131 (26%), Positives = 56/131 (42%)
 Frame = +1

Query: 115 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 294
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A ++               IK  
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51

Query: 295 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 474
           A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  +   
Sbjct: 52  ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110

Query: 475 XXXXXXXXQTE 507
                   QTE
Sbjct: 111 DVAKGVEEQTE 121


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 76  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 256 K 258
           +
Sbjct: 172 R 172


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -3

Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 327
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 326 FSSSSK 309
             SS K
Sbjct: 672 MGSSDK 677


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 458 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 504 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 412
           S Y+ + HT+N+H+ + + +T C+C ++  ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +1

Query: 118  KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 297
            K  NI  +     V+  KST  D LVS   +         +     +DE D     KST 
Sbjct: 1738 KSTNINKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEDEYD----AKSTN 1793

Query: 298  ISMFFELEEKDLVFITNPDQ 357
            I       E +L   TN D+
Sbjct: 1794 IDKLVSNNEVELAKSTNIDK 1813



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +1

Query: 61   HKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
            H  S  ++  V   +G + K  NI  +     V   KST  D LVS   +   A++    
Sbjct: 1461 HAKSTNIDKLVSNNKGELAKSTNIDKLVSNNEVVLAKSTNIDKLVSNNEVEYDAKS---- 1516

Query: 241  FTDTRKDEQDRCITI-KSTAISMFFELEEKDLVFITNPDQREKSEKGFL 384
             T+  K   +  + + KST I       E +L   TN D+   + KG L
Sbjct: 1517 -TNIDKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNKGEL 1564


>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
          Length = 134

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 168 AVIDVGDHRHVADIPLLVHHPTDLVYREIHH 76
           ++I +  H H +   +++HHP+ ++    HH
Sbjct: 27  SIIIIHHHHHPSSSIIIIHHPSSIIIIIHHH 57


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 197 PRPVSLLVREPE-RPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI 331
           P    ++V  P  RP+ ++ +     V SPLN+RP + S    R I
Sbjct: 550 PNVRPIMVSPPNVRPIVVSPLNVRPIVVSPLNVRPIMVSPPNVRPI 595


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 512  TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 375
            T+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2818 TIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,606
Number of Sequences: 59808
Number of extensions: 334269
Number of successful extensions: 1230
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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