BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c23 (514 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 225 1e-59 SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-08 SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 6e-05 SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18 SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.18 SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18 SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.42 SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 3.0 SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 27 9.1 SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 27 9.1 SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 225 bits (551), Expect = 1e-59 Identities = 112/145 (77%), Positives = 122/145 (84%) Frame = +1 Query: 79 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 258 VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60 Query: 259 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 438 DEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTA Sbjct: 61 DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118 Query: 439 ALRVTDGALXXXXXXXXXXXQTETV 513 ALRVTDGAL QTETV Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETV 143 >SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2670 Score = 48.8 bits (111), Expect(2) = 5e-08 Identities = 23/54 (42%), Positives = 36/54 (66%) Frame = +1 Query: 130 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 291 +RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+ Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993 Score = 25.4 bits (53), Expect(2) = 5e-08 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 394 IDSPGHVDFSSEVTAALRVTDGAL 465 + + GHVDFS EV+ +L G + Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVV 2014 >SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 359 Score = 44.4 bits (100), Expect = 6e-05 Identities = 35/131 (26%), Positives = 56/131 (42%) Frame = +1 Query: 115 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 294 D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51 Query: 295 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 474 A S F E+E + + + + + IN++D+PGH DF+ + L D + Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110 Query: 475 XXXXXXXXQTE 507 QTE Sbjct: 111 DVAKGVEEQTE 121 >SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 545 Score = 32.7 bits (71), Expect = 0.18 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240 ++++ HVDHGK+TL D+L + + AG G T+ Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63 >SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) Length = 106 Score = 32.7 bits (71), Expect = 0.18 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +1 Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207 M K++ N+ VI HVD GKST T L+ K G Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32 >SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 809 Score = 32.7 bits (71), Expect = 0.18 Identities = 14/61 (22%), Positives = 30/61 (49%) Frame = +1 Query: 76 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255 + N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171 Query: 256 K 258 + Sbjct: 172 R 172 >SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) Length = 240 Score = 31.5 bits (68), Expect = 0.42 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +1 Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240 ++V+ HVDHGK++L D + A +I G G T+ Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126 >SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1864 Score = 29.1 bits (62), Expect = 2.2 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = -3 Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 327 TH+P + TTT AP+ E C G+ ++L K +L R+ G Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671 Query: 326 FSSSSK 309 SS K Sbjct: 672 MGSSDK 677 >SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) Length = 300 Score = 28.7 bits (61), Expect = 3.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 458 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336 P R A TCPGE ++L+ + +RWS V+N Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281 >SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 440 Score = 28.7 bits (61), Expect = 3.0 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -3 Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411 T TP+TQSTTT P T+S T E +ST Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372 Score = 27.5 bits (58), Expect = 6.9 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -3 Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411 T TP+TQSTTT P T+S T E +ST Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417 >SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 453 Score = 27.9 bits (59), Expect = 5.2 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -2 Query: 504 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 412 S Y+ + HT+N+H+ + + +T C+C ++ ++ Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223 >SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3160 Score = 27.5 bits (58), Expect = 6.9 Identities = 23/80 (28%), Positives = 30/80 (37%) Frame = +1 Query: 118 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 297 K NI + V+ KST D LVS + + +DE D KST Sbjct: 1738 KSTNINKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEDEYD----AKSTN 1793 Query: 298 ISMFFELEEKDLVFITNPDQ 357 I E +L TN D+ Sbjct: 1794 IDKLVSNNEVELAKSTNIDK 1813 Score = 27.1 bits (57), Expect = 9.1 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Frame = +1 Query: 61 HKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240 H S ++ V +G + K NI + V KST D LVS + A++ Sbjct: 1461 HAKSTNIDKLVSNNKGELAKSTNIDKLVSNNEVVLAKSTNIDKLVSNNEVEYDAKS---- 1516 Query: 241 FTDTRKDEQDRCITI-KSTAISMFFELEEKDLVFITNPDQREKSEKGFL 384 T+ K + + + KST I E +L TN D+ + KG L Sbjct: 1517 -TNIDKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNKGEL 1564 >SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) Length = 134 Score = 27.1 bits (57), Expect = 9.1 Identities = 8/31 (25%), Positives = 18/31 (58%) Frame = -2 Query: 168 AVIDVGDHRHVADIPLLVHHPTDLVYREIHH 76 ++I + H H + +++HHP+ ++ HH Sbjct: 27 SIIIIHHHHHPSSSIIIIHHPSSIIIIIHHH 57 >SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) Length = 1002 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 197 PRPVSLLVREPE-RPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI 331 P ++V P RP+ ++ + V SPLN+RP + S R I Sbjct: 550 PNVRPIMVSPPNVRPIVVSPLNVRPIVVSPLNVRPIMVSPPNVRPI 595 >SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3292 Score = 27.1 bits (57), Expect = 9.1 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = -3 Query: 512 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 375 T+ T + STTT A ++ TS + E+ + IKKP Sbjct: 2818 TIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,449,606 Number of Sequences: 59808 Number of extensions: 334269 Number of successful extensions: 1230 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1220 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1136110413 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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