Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c23
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 225 1e-59
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 6e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.18
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.42
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 3.0
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 27 9.1
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 27 9.1
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 225 bits (551), Expect = 1e-59
Identities = 112/145 (77%), Positives = 122/145 (84%)
Frame = +1
Query: 79 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 258
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 259 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 438
DEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61 DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118
Query: 439 ALRVTDGALXXXXXXXXXXXQTETV 513
ALRVTDGAL QTETV
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETV 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 5e-08
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 130 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 291
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 25.4 bits (53), Expect(2) = 5e-08
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 394 IDSPGHVDFSSEVTAALRVTDGAL 465
+ + GHVDFS EV+ +L G +
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVV 2014
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.4 bits (100), Expect = 6e-05
Identities = 35/131 (26%), Positives = 56/131 (42%)
Frame = +1
Query: 115 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 294
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 295 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 474
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 475 XXXXXXXXQTE 507
QTE
Sbjct: 111 DVAKGVEEQTE 121
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +1
Query: 76 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 256 K 258
+
Sbjct: 172 R 172
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 327
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 326 FSSSSK 309
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 458 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411
T TP+TQSTTT P T+S T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 504 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 412
S Y+ + HT+N+H+ + + +T C+C ++ ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 118 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 297
K NI + V+ KST D LVS + + +DE D KST
Sbjct: 1738 KSTNINKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEDEYD----AKSTN 1793
Query: 298 ISMFFELEEKDLVFITNPDQ 357
I E +L TN D+
Sbjct: 1794 IDKLVSNNEVELAKSTNIDK 1813
Score = 27.1 bits (57), Expect = 9.1
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +1
Query: 61 HKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
H S ++ V +G + K NI + V KST D LVS + A++
Sbjct: 1461 HAKSTNIDKLVSNNKGELAKSTNIDKLVSNNEVVLAKSTNIDKLVSNNEVEYDAKS---- 1516
Query: 241 FTDTRKDEQDRCITI-KSTAISMFFELEEKDLVFITNPDQREKSEKGFL 384
T+ K + + + KST I E +L TN D+ + KG L
Sbjct: 1517 -TNIDKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNKGEL 1564
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 168 AVIDVGDHRHVADIPLLVHHPTDLVYREIHH 76
++I + H H + +++HHP+ ++ HH
Sbjct: 27 SIIIIHHHHHPSSSIIIIHHPSSIIIIIHHH 57
>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
Length = 1002
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 197 PRPVSLLVREPE-RPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI 331
P ++V P RP+ ++ + V SPLN+RP + S R I
Sbjct: 550 PNVRPIMVSPPNVRPIVVSPLNVRPIVVSPLNVRPIMVSPPNVRPI 595
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 512 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 375
T+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2818 TIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,606
Number of Sequences: 59808
Number of extensions: 334269
Number of successful extensions: 1230
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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