BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c22 (559 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 30 1.4 11_06_0510 + 24420402-24422582 29 2.5 01_03_0018 - 11686420-11687460 29 3.3 11_06_0514 - 24477720-24479915 28 4.4 01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 28 4.4 04_03_0096 + 11158108-11159083,11159116-11159744 28 5.8 06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 27 7.7 >01_03_0271 + 14454681-14456949,14457222-14457476,14458800-14458864, 14459053-14459171,14459270-14459324 Length = 920 Score = 29.9 bits (64), Expect = 1.4 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Frame = +3 Query: 105 DVHDKE--LKIEENPRVYCGRHLANARMVLCYDTV---EKRAQSYLDANIISAGDLSSWP 269 +VHD + LK+ N RV+CG H+ +DT + S L+ ++A S Sbjct: 814 EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDTETLDDDEVVSNLNCRPMAARSAISIV 873 Query: 270 GLSSQYAKTRAFALAEKSKRG 332 L+ Y R + K G Sbjct: 874 ALTLNYKMARKNRMQNHGKGG 894 >11_06_0510 + 24420402-24422582 Length = 726 Score = 29.1 bits (62), Expect = 2.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 286 YWEDRPGQELKSPAEIMFAS 227 YW+ RP L SPA IMF + Sbjct: 130 YWKSRPSMRLMSPAIIMFVA 149 >01_03_0018 - 11686420-11687460 Length = 346 Score = 28.7 bits (61), Expect = 3.3 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = +3 Query: 198 TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 344 T+E + +A G + WP S TR + E RG GLV Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339 >11_06_0514 - 24477720-24479915 Length = 731 Score = 28.3 bits (60), Expect = 4.4 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 286 YWEDRPGQELKSPAEIMFAS 227 YW+ RPG L PA IMF + Sbjct: 130 YWKSRPGVRLMIPAIIMFVA 149 >01_06_1202 + 35396165-35396260,35396398-35396549,35396694-35396938, 35397044-35398350 Length = 599 Score = 28.3 bits (60), Expect = 4.4 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Frame = +3 Query: 60 MFLLYFLIVVALVSADVHDKELKIEENP-RVYCGRH-LANARMVLCYDTVEKRAQSYLDA 233 +FLL ++ L A+VH E ++E P + C H + L T+E R + Sbjct: 10 LFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVI 69 Query: 234 NIISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVDECCLKPCYTY 377 N+++ + ++ + R F GP V +C +KP +Y Sbjct: 70 NVVNHAQYN----VTIHWHGIRQFRTGWAD--GPEFVTQCPIKPGGSY 111 >04_03_0096 + 11158108-11159083,11159116-11159744 Length = 534 Score = 27.9 bits (59), Expect = 5.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +3 Query: 129 IEENPRVYCGRHLANARMVLCYDTVEKRAQSYLDANIISAGDLS 260 ++ P V+ GRH R + ++ SY D N++ + DLS Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211 >06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292, 4158457-4158826,4159925-4160590,4161008-4161223, 4161725-4161793 Length = 1048 Score = 27.5 bits (58), Expect = 7.7 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +3 Query: 84 VVALVSADVHDKELKIEENPRVYCGRHLANARMVLCYDTVEKRAQSYLDANIISAGD 254 +VAL D+ LK EE+ R G H+ L T++++ + L A + AGD Sbjct: 887 IVALAEVGRLDQGLKTEED-RPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGD 942 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,129,474 Number of Sequences: 37544 Number of extensions: 257839 Number of successful extensions: 626 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 626 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1269546012 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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