Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c22
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)               29   2.6  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   29   3.4  
SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)                     28   5.9  
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      28   5.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   5.9  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)
          Length = 122

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 153 CGRHLANARMVLCYD---TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKS 323
           CG  +++A  ++CY    T  +R  +  D +I+ + D +      +Q  K  +       
Sbjct: 48  CGDQISDAWTIICYGGGVTARQRQINRRDLSIVQSADEARQFNSKTQRGKRSSIYT---- 103

Query: 324 KRGPGLVDECCLKPCYTYDLLNYC 395
                + +ECC++ C   ++  YC
Sbjct: 104 -----ITEECCVEGCKQEEIREYC 122


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -2

Query: 279 KTGQARSSNLPPK*CLRRDKIGLSSRQ---CHSRVPCVRWPNDVRNRPEDFPQFSTLCRG 109
           K G   SS L  K  LR +  G+ + Q     S +PC R    +R+   D   F  LC G
Sbjct: 611 KAGVFSSSMLRHKATLRENITGMLATQGQGSRSWMPCYR----LRSNGADLTTFDKLCTG 666

Query: 108 RQHSPAPQRSGN 73
           +  +    R+GN
Sbjct: 667 KGPTVTVARTGN 678


>SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +3

Query: 342 VDECC----LKPCYTYDLLNYC*T 401
           +D CC    L PCYTY LL+ C T
Sbjct: 162 LDSCCTYRFLDPCYTYRLLDPCCT 185


>SB_36050| Best HMM Match : HLH (HMM E-Value=0.004)
          Length = 141

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 147 PEDFPQFSTLCRGRQHSPAPQ---RSGNTAETSLKFQYVGMKTTARVR 13
           P+D PQ  TL   RQ     +   ++G+    S+ +   G KTT+  R
Sbjct: 63  PQDTPQIQTLREARQKIQELKDKLQNGDNERNSIPYSRTGWKTTSHAR 110


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 69  LYFLIVVALVSADVHDKELKIEENPRVYCGR 161
           L F+IV       V  KE+++E+ P  YCGR
Sbjct: 7   LLFIIVTLSAVHQVLGKEVELEKCPGQYCGR 37


>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 VLTSTTKS*KLRKILGSIADVIWPTHAWYSAMT---LSRREPNLISTQTLFR 246
           ++ S  K  +  + +G +   IWPT AWY  +    L++    L +++TL R
Sbjct: 252 LMPSVLKKVQEDRAMGVLVAPIWPTQAWYPKLNNKMLAQPAIELKASKTLLR 303


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 171 WPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTA 67
           W N    RP     FS+L + ++ +P PQ   +TA
Sbjct: 51  WRNASERRPSGRGFFSSLFKKKKQAPTPQTQASTA 85


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 133 RKILGSIADVIWPTHAWYSAMTLSRREPNLISTQTLFRREI*APGLACLPSTPRLALLLS 312
           R+I   +  + W     Y    LS           LFR E+   G +  P  PRL  L +
Sbjct: 332 REIRAKLFRLFWLRTIAYHPEFLSSASHTNTQGIILFRAELSILGASYFPYLPRLQRLTT 391

Query: 313 PRNL 324
           P NL
Sbjct: 392 PNNL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,688
Number of Sequences: 59808
Number of extensions: 293061
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)