Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c22
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             29   2.8  
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    29   2.8  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   4.9  
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ...    27   6.4  
At3g10440.1 68416.m01252 hypothetical protein                          27   6.4  
At1g14780.1 68414.m01767 expressed protein                             27   6.4  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   8.5  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   8.5  
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    27   8.5  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 313  ARAKARVLAYWEDRPGQELKSPAEIMFA 230
            A  ++RV+ YWE+   + +K+PAE+  A
Sbjct: 1018 ASNQSRVIGYWENIQPENVKTPAEVYAA 1045


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 312 REQKRESWRTGKTGQARSSNLPPK*CLRRDKIGLSSRQCH 193
           R+  RE  R       R ++  P+ C +  K+G  +R CH
Sbjct: 11  RDNDRERTRASYNNDRRRNDYDPRACYKCGKLGHFARSCH 50


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = -2

Query: 222 KIGLSSRQCHSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETSL 55
           KI L      S V   +WP     R   FP+      G+ HS  P R     E S+
Sbjct: 264 KIHLKVNDPGSNVLPAQWPESESARRNSFPEQRRRPAGKSHSFGPSRFRGNLEDSV 319


>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
           profile PF02453: Reticulon
          Length = 457

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 231 RRDKIGLSSRQCHSRVPCVRWPNDVRNRPEDFPQ 130
           ++ K+G S ++ HS VP +  P+   ++P+D  Q
Sbjct: 152 KQKKLGRSKKEKHSSVPLLASPSPSSDQPQDVCQ 185


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 165 NDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETSLK 52
           ND  N   D  Q    C GRQ S +  R  +  ET  K
Sbjct: 235 NDAENHINDNVQSKRYCAGRQSSSSKTREASQTETLQK 272


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 168 PNDVRNRPEDFPQFSTLCRGRQHSP 94
           P    N+   F   S LCRG QHSP
Sbjct: 568 PVPANNKIVKFVDLSQLCRGPQHSP 592


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 198 TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRG 332
           TV  +A+ Y D N+I   D   +  L+ Q+ +   + +  K  RG
Sbjct: 69  TVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRG 113


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -3

Query: 257  QISRRNNVCVEIRLGSLLDSVIAE----YHACVGQMTSA 153
            ++S  +NV V    GS +D++I+     Y+ACVG+ T A
Sbjct: 901  KVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHA 939


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
 Frame = -2

Query: 222 KIGLSSRQCHSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQR----SGN------ 73
           KI L      S V   +WP     R   FP+      G+ HS  P R    SG+      
Sbjct: 264 KIHLKVNDPGSNVLPAQWPESESARRNSFPEQRRRPAGKSHSFGPSRFRDASGDGTVVRR 323

Query: 72  TAETSLKFQYVGMKTTA 22
           T+E S   +YV ++ +A
Sbjct: 324 TSEASKSSRYVPVRASA 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,672,915
Number of Sequences: 28952
Number of extensions: 203487
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)