SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c21
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   68   5e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 67   8e-12
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 60   2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 59   2e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 59   2e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       58   7e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   7e-09
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   56   2e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 47   9e-06
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    33   0.22 
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)                    32   0.38 
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              30   1.5  
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_9039| Best HMM Match : M (HMM E-Value=0.00046)                      29   3.5  
SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)         28   4.7  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.2  
SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              27   8.2  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   8.2  
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 452
           DK ++  LDV+++ PEEIS+K   G + ++GKH+  + EHGY + +F R Y LP+  +  
Sbjct: 38  DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96

Query: 453 TVESRLSSDGVLTVIA 500
           TV SR++ DG+L + A
Sbjct: 97  TVSSRITGDGLLHIEA 112



 Score = 32.7 bits (71), Expect(2) = 0.040
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 417 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 545
           R + LP++ + D++ SRL  DG L + A R    T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203



 Score = 21.4 bits (43), Expect(2) = 0.040
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 279 KFQVNLDVQHFSPE 320
           +F V LDV  FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
 Frame = +3

Query: 276 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 452
           DKFQ+  LDV+ F PEEI+ K  +G + V G  +  + E G+ S++F R Y LPE  +  
Sbjct: 4   DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62

Query: 453 TVESRLSSDGVLTVIA-PRTPAATKNERAVPITQ 551
           ++ +R++ DG+L V A  ++P AT   +A P T+
Sbjct: 63  SISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +3

Query: 222 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 401
           K+   A  +  +  T +  KF + LDV  F PEE+ VK     + V  + E   +EHG+ 
Sbjct: 80  KKSPPATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 137

Query: 402 S-RQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTP 512
           + RQF R + LP   + DT+  RL  DGVL + A + P
Sbjct: 138 TARQFNRHFVLPREVDMDTLVPRLGKDGVLYIEADKRP 175


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/69 (42%), Positives = 44/69 (63%)
 Frame = +3

Query: 294 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 473
           LDV+ + PEEIS K  +G V V+G+H   + E G+  ++F R + LPE  +P+ V SR+S
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70

Query: 474 SDGVLTVIA 500
           + G L + A
Sbjct: 71  NHGHLHIEA 79



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 44/83 (53%)
 Frame = +3

Query: 267 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 446
           + +DKF + +DV  F PE I V+     ++V   HE   + H Y +  F R++ LP   +
Sbjct: 93  AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151

Query: 447 PDTVESRLSSDGVLTVIAPRTPA 515
            D++ +RL  +G L   A ++ A
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA 174


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 443
           +N++K ++  LDV+ + PEEIS K  +G+V V+G+H   +   G+  ++F R +ALPE  
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60

Query: 444 NPDTVESRLSSDGVLTVIA 500
               V++R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 410
           A+   D G   +   DKF + +DV  F P+ I V+     ++V   HE   + H Y +  
Sbjct: 82  ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140

Query: 411 FTRRYALPENCNPDTVESRLSSDGVL 488
           F R++ LP   + D++ +RL  +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 443
           +N++K ++  LDV+ + PEEIS K  +G+V V+G+H   +   G+  ++F R +ALPE  
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60

Query: 444 NPDTVESRLSSDGVLTVIA 500
               V++R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 410
           A+   D G   +   DKF + +DV  F P+ I V+     ++V   HE   + H Y +  
Sbjct: 82  ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140

Query: 411 FTRRYALPENCNPDTVESRLSSDGVL 488
           F R++ LP   + D++ +RL  +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 443
           +N++K ++  LDV+ + PEEIS K  +G+V V+G+H   +   G+  ++F R + LPE  
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60

Query: 444 NPDTVESRLSSDGVLTVIA 500
               V++R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 452
           D+ ++  LDV+ + PEEIS K  +G+V V+G+H   +   G+  ++F R + LPE     
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297

Query: 453 TVESRLSSDGVLTVIA 500
            V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 410
           A+   D G   +   DKF + +DV  F P+ I V+     ++V   HE   + H Y +  
Sbjct: 82  ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140

Query: 411 FTRRYALPENCNPDTVESRLSSDGVL 488
           F R++ LP   + D++ +RL  +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 410
           A+   D G   +   DKF + +DV  F P+ I V+     ++V   HE   + H Y +  
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374

Query: 411 FTRRYALPENCNPDTVESRLSSDGVL 488
           F R++ LP   + D++ +RL  +G L
Sbjct: 375 FNRQFVLPREVDMDSLTTRLDKEGKL 400


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 443
           +N++K ++  LDV+ + PEEIS K  +G+V V+G+H   +   G+  ++F R + LPE  
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60

Query: 444 NPDTVESRLSSDGVLTVIA 500
               V++R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/86 (30%), Positives = 43/86 (50%)
 Frame = +3

Query: 231 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 410
           A+   D G   +   DKF + +DV  F P+ I V+     ++V   HE   + H Y +  
Sbjct: 82  ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140

Query: 411 FTRRYALPENCNPDTVESRLSSDGVL 488
           F R++ LP   + D++ +RL  +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 261 ITSNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 437
           + +N++K ++  LDV+ + PEEIS K  +G V V+G+H   +   G+  ++F R + LPE
Sbjct: 1   MANNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPE 59

Query: 438 NCNPDTVESRLSSDGVLTVIA 500
                 V++R+S+ G L + A
Sbjct: 60  GVEASNVKTRISNHGQLHIEA 80



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 26/79 (32%), Positives = 42/79 (53%)
 Frame = +3

Query: 252 GSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYAL 431
           G+   S  DKF + +DV+ F PE I V+     ++V   HE   + H Y +  F R++ L
Sbjct: 89  GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147

Query: 432 PENCNPDTVESRLSSDGVL 488
           P   + D++ +RL  +G L
Sbjct: 148 PREVDMDSLTTRLDKEGKL 166


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 222 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 401
           K+   A ++  S  T +  KF + LDV  F PEE+ VK     + V  + E   +EHG+ 
Sbjct: 8   KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 65

Query: 402 -SRQFTRRYALPE 437
            +RQF R + LP+
Sbjct: 66  TARQFNRHFVLPQ 78


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 366 KHEERQDEHGYISRQFTRRYAL 431
           KHEER+D HGY+  + T ++AL
Sbjct: 72  KHEEREDRHGYLKDKVTLQHAL 93


>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
          Length = 468

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPV 563
           CNPD+ ++ ++S       AP TP AT     V  T T PV
Sbjct: 77  CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPV 117


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 360  EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 491
            E K+EE  DEHG I R+ T+           TV   ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230


>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 330 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 437
           +++A GYV+  G H  + +  G +    + R  LP+
Sbjct: 10  IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45


>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
          Length = 716

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
 Frame = +3

Query: 153 LTPDDLLTAVITPTM---SRDYYRPWKQMAMANRDVG-STITSNKDKFQVNLDVQHFSPE 320
           +T D L   V TP M   S D       M M + DV  ST     D   V  +  H + +
Sbjct: 225 MTMDSLDVEVSTPHMTMDSLDVEVNTPHMTMDSLDVEVSTPHMTMDSLDVEDNTPHMTMD 284

Query: 321 EISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 470
            + V+    ++ ++    E Q+E     ++   +YA   N   +  E++L
Sbjct: 285 SLDVEVNTPHMTMDSLDAEMQEEFLQKRQEMEAKYAEQFNAAKEEFEAKL 334


>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
          Length = 1065

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 206 ISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEW---QQRHFYFTLGCEISSDITVR 36
           +   +WR D R  I+RS++     +   V LVS D +    QR  + T+G   S+ + ++
Sbjct: 383 LEDEQWRVDFRDVIIRSRQMGS--LRSQVSLVSTDSFDNINQRQIFTTVGIYKSNMVAIK 440


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 107 GIPTEPPSRSGLRTGAYSGRS-PDGRH 184
           G P+ PPSRS  RT   SG S  D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879


>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/59 (20%), Positives = 29/59 (49%)
 Frame = +3

Query: 174 TAVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 350
           T  +  +    + +P ++M +   +V + +  +KDK+Q+ + +Q     E++  T   Y
Sbjct: 140 TLTVYKSQEEAFGQPVQRMNLRGCEVTTDVNVSKDKYQIRMRLQDNEEIELACSTESQY 198


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 96  PFILGYQPNRLRDQDFGLALTPDDLLTAVI-TPTMSRDYYRPW 221
           PF +G+  N++  + F     PD L   +I TP M    ++P+
Sbjct: 34  PFKIGWYNNQVTHKQFQFPFDPDTLAFVIISTPEMFEKGFKPF 76


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/81 (23%), Positives = 31/81 (38%)
 Frame = +3

Query: 300  VQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 479
            + H+    +   T     +  G+  E  +   Y+SR  TR+ A P +  PD   S + + 
Sbjct: 1565 MSHYQASTVLKNTGTSVELALGRSREAAE---YLSR--TRQQASPHSTEPDIKPSNIQTT 1619

Query: 480  GVLTVIAPRTPAATKNERAVP 542
                 I+PR        R  P
Sbjct: 1620 ESTPSISPRGVEVAAGPRRTP 1640


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 266 GDGGTDVSIGHRHLLPRPVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 87
           G G  + S G + +     V    +WR +G  +  RS  + EV   K V    + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,610
Number of Sequences: 59808
Number of extensions: 336199
Number of successful extensions: 1067
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -