BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c20 (652 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 236 1e-62 02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 229 2e-60 01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 5.6 03_06_0712 - 35683814-35684065,35685296-35685466 27 9.8 >09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 Length = 190 Score = 236 bits (577), Expect = 1e-62 Identities = 110/189 (58%), Positives = 148/189 (78%), Gaps = 1/189 (0%) Frame = +1 Query: 61 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 237 MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60 Query: 238 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 417 G+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120 Query: 418 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 597 +R+V M GVT++ S K KDEL+++GN +E VS SAALI Q VKNKDIRKFLDG+YV Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180 Query: 598 SEKTTVVLD 624 S+K T+ D Sbjct: 181 SDKGTITED 189 >02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-178126, 178260-178322,178964-179167,180605-180687,182394-182516, 182987-183328 Length = 543 Score = 229 bits (559), Expect = 2e-60 Identities = 107/182 (58%), Positives = 141/182 (77%), Gaps = 3/182 (1%) Frame = +1 Query: 88 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 258 ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60 Query: 259 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 438 A+RT SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M Sbjct: 61 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120 Query: 439 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 618 GVT++ S K KDEL+++GN +E VS SAALI Q VKNKDIRKFLDG+YVS+K T+ Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTIT 180 Query: 619 LD 624 D Sbjct: 181 ED 182 >01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 Length = 1472 Score = 28.3 bits (60), Expect = 5.6 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 16 SKRSFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 171 S++SF S + P ++ +P G T H +S + V+GPRG + N Sbjct: 39 SRQSFLPSSTARWPRFPPVLG----PLPRGATSHRESGISAVRGPRGRIGEN 86 >03_06_0712 - 35683814-35684065,35685296-35685466 Length = 140 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Frame = +1 Query: 157 VLKRNF-KHLAVDIRMVNPRLLKVE 228 VLKR+F + AVD+R +NP++ K E Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,390,802 Number of Sequences: 37544 Number of extensions: 360043 Number of successful extensions: 843 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 841 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1620349964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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