Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c18
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 39 0.004
03_02_0484 + 8805053-8805538 39 0.004
03_02_0483 - 8804021-8804485 39 0.004
03_02_0478 + 8775892-8776377 37 0.011
02_02_0077 - 6586638-6587165 37 0.011
04_04_0017 + 22176759-22177406 36 0.019
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.034
01_01_0229 - 1943473-1943922 35 0.045
01_01_0231 + 1951047-1951499 35 0.059
11_02_0041 - 7669692-7670312 34 0.10
02_05_0494 + 29486960-29487454 33 0.14
01_01_0227 + 1933247-1933699 33 0.24
06_01_0613 + 4439829-4439917,4440650-4440738,4441219-4441453,444... 32 0.42
01_01_0599 - 4448290-4448790 31 0.55
02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633... 31 0.97
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 1.3
05_06_0034 + 25082875-25084113 29 3.9
01_01_0228 + 1940149-1940649 29 3.9
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 28 6.8
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 28 6.8
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 27 9.0
09_02_0300 - 7073153-7073589,7074058-7074169 27 9.0
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
S +F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>02_02_0077 - 6586638-6587165
Length = 175
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG 578
+F+RR+ LPE A + V + DGVLT+T +K P K R V + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>04_04_0017 + 22176759-22177406
Length = 215
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTG 578
+F R+ LP+ A +++ + L + GVLT+ + PD +KG R V IA G
Sbjct: 141 RFWRQLRLPDNADLDSIAASLDN-GVLTVRFRKLAPDQIKGPRVVGIASAG 190
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
+F RR+ +P GA V +RL DGVLT+T P KVP
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVP 174
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 423 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
R V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
S +F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>06_01_0613 +
4439829-4439917,4440650-4440738,4441219-4441453,
4441768-4441771,4441829-4441930
Length = 172
Score = 31.9 bits (69), Expect = 0.42
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 364 GTS*WKASTKRRKTS-TGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCLTP 540
G + W+ R +S G S ++C + + R+C S L GR +
Sbjct: 60 GKNGWRVELSRNASSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRRSR 119
Query: 541 SRERERCPSHRPVP-FARRSRIRVKK 615
SR R R P +R P + RR I KK
Sbjct: 120 SRSRSRSPRYRRSPSYGRRIYIYTKK 145
>01_01_0599 - 4448290-4448790
Length = 166
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 566
+F+R++ LP+ A + + S + DGVLT+T + P K + + +
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163
>02_05_1020 -
33561454-33561568,33561839-33562070,33563286-33563374,
33563856-33563944
Length = 174
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +1
Query: 364 GTS*WKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCLTPS 543
G + W+ R +S G +C + + R+C L G+ + S
Sbjct: 60 GKNGWRVELSRNSSSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKRRSRS 119
Query: 544 RERERCPSHRPVP-FARRS 597
R R R P +R P + RRS
Sbjct: 120 RSRSRSPQYRKSPTYGRRS 138
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 427 SSSDVTRCLKARRLRLWNRDCHQTGYSPSLRRGRCLTPSRERERCPSHRPVPFAR 591
SS +V R + RR +RD + G S S RR R +P+R R +HR PF R
Sbjct: 328 SSRNVDRQGRERR----DRDSDRHGRS-SARRSRSRSPNRGRTEGENHRSSPFGR 377
>05_06_0034 + 25082875-25084113
Length = 412
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 577 PVCAMGTFLSPLTASGTFLGAVMVSTPSDDSRDSTVSGAAP 455
P+ A+G LSP S + L A + S+PS S S+ S P
Sbjct: 129 PIQALGQILSPAN-SASVLAASVTSSPSSSSSSSSSSPPLP 168
>01_01_0228 + 1940149-1940649
Length = 166
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 429 FVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGER 554
+V R LP G E V + VL IT R V KG+R
Sbjct: 52 YVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQR 93
>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 617 GFFTLILDLLANGTGLC 567
GFF+L D + NGTG+C
Sbjct: 1203 GFFSLPYDKIGNGTGIC 1219
>01_02_0042 -
10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 485 TVIRRGTHHHCAE--EGA*RRQGREKGAHRTDRSRSQGDQGS 604
T++ +G HH + EGA + + + A+R D+S +GD G+
Sbjct: 607 TLVEKGPHHELLKDPEGAYSQLIKLQEANRQDKSDRKGDSGA 648
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAV 542
A P A+PET ES ++ L T P K+ D V
Sbjct: 151 APPNDASPETQESNENTTNALEQTLPEKMEDDV 183
>09_02_0300 - 7073153-7073589,7074058-7074169
Length = 182
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 477 ESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQ 605
E+ LSS+ + TAPR +P ++G+ V I + VR +K Q
Sbjct: 141 EAELSSEVIRINTAPRVIPCHLEGD-NVGILYSPTVRANLKGQ 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,669
Number of Sequences: 37544
Number of extensions: 337190
Number of successful extensions: 1039
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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