Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c17
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 98 1e-21
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 97 3e-21
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 95 1e-20
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 93 4e-20
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 86 4e-18
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 84 1e-17
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 83 4e-17
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 82 8e-17
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 66 5e-12
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 45 8e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 44 2e-05
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 38 0.001
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 38 0.001
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 34 0.020
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 33 0.035
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 30 0.25
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 29 0.43
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 28 1.0
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 27 2.3
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 4.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 5.3
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.1
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 25 7.1
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.3
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.3
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 97.9 bits (233), Expect = 1e-21
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
MA K +LKVI+ GE GVGK+S+ +++N F + D +AT+G D K V DK V
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKF--SKDYKATIGADFLTKEVLVDDKVVT 58
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIV-----SYAENA 505
LQLWDT G ER S+ ++Y+ A+ +LV+ ++N+ SF L E + S E
Sbjct: 59 LQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETF 118
Query: 506 KIFLCGNKSDLEGASPQVTDADIETFCE 589
L GNK D+E V+ + FC+
Sbjct: 119 PFILLGNKVDVEEQKRMVSKSKALAFCQ 146
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 96.7 bits (230), Expect = 3e-21
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVA----DKDVKLQL 349
++K++L G G GKS L +RF+ N + + T+G+D ++ V K +KLQ+
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQW--DDQVSHTVGIDFASRIISVGMGNQQKRIKLQI 66
Query: 350 WDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENA-KIFLCGN 526
WDT G E+ SV +YY+ A A+LV+ + N SF LS L +I + A + + L G+
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGS 126
Query: 527 KSDLEGASPQVTDADIETFCEQCHNLVNSTYKTSCKTG 640
KSDL+ QV+ + FC + H ++S ++TS TG
Sbjct: 127 KSDLQN-QRQVSTEEAAEFCSEKH--ISSAHETSSYTG 161
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 94.7 bits (225), Expect = 1e-20
Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
+ K++L G+ GVGKS L RF ++T+ + +T+G+D + +++ K VKLQ+WDT
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTFELEGKTVKLQIWDTA 65
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDL 538
G ER ++TSSYY+ A I+V+ + + SF+ + Q L EI YA E L GNKSD+
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 92.7 bits (220), Expect = 4e-20
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
+ K +L G+ GVGKS+L RF N F N + ++T+G++ + + +K +K Q+WDT
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEF--NIESKSTIGVEFATRNIVLDNKKIKAQIWDTA 67
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAE-NAKIFLCGNKSDL 538
G ER ++TS+YY+ A A++V+ + SSF + + L E+ +A+ N I L GNK+DL
Sbjct: 68 GQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL 127
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 86.2 bits (204), Expect = 4e-18
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
M+ K LKV++ G+ GVGK+ L +F+N F + + +AT+G D K V DK V
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKF--SREYKATIGADFLTKDVVVDDKLVT 58
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILS---QHLLEIVSYAENAKI 511
LQLWDT G ER S+ ++Y+ A+ ++V++++N+ SF + Q L S E A
Sbjct: 59 LQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFP 118
Query: 512 F-LCGNKSDLEGASPQVTDADIETFCEQCHNLVNSTYKTSCK 634
F + GN+ D + + V+ +C+ H ++ S K
Sbjct: 119 FIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAK 160
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 84.2 bits (199), Expect = 1e-17
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGGM 367
K++ GE VGK+SL RF+ + F ++ +AT+G+D K + D+ V+LQLWDT G
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 368 ERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEI-VSYAENAKIFLCGNKSDLEG 544
ER S+ SY + + AI+V+ + N +SF + + ++ ++ I L GNK+DL
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDL-A 129
Query: 545 ASPQVTDADIETFCEQCHNLVNSTYKTSCKTG 640
QVT + E ++ L +TS K G
Sbjct: 130 DKRQVTQEEGE---KKAKELKIMHMETSAKAG 158
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 82.6 bits (195), Expect = 4e-17
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADK-DVKLQLWDTGG 364
K++L G+ VGKSSL RF+ + F + R +T+G + + + VKL++WDT G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF--DDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 365 MERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDLE 541
ER S+ YY+ A AI+V+ + A+S + E+ A E I L GNK DL
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 542 GASPQVTDADIETFCEQCHNLVNSTYKTSCKTGK 643
V AD E + + + L ++TS KT +
Sbjct: 134 QERRAVEKADAEAYAAEANLLF---FETSAKTAE 164
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 81.8 bits (193), Expect = 8e-17
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTG 361
++K++L G+ GVGKS L RF ++F P+ T+G+D + ++ K +KLQ+WDT
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFI--TTIGIDFKIRTIELDGKRIKLQIWDTA 66
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYA-ENAKIFLCGNKSDL 538
G ER ++T++YY+ A +L++ + + SF + + +A EN L GNK D
Sbjct: 67 GQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC 126
Query: 539 E 541
E
Sbjct: 127 E 127
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 65.7 bits (153), Expect = 5e-12
Identities = 32/121 (26%), Positives = 60/121 (49%)
Frame = +2
Query: 179 PVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDT 358
P K++L G+ G GK++ +R + F ATLG++ + ++ +WDT
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATLGVEVHPLHFHTNFGEICFNVWDT 65
Query: 359 GGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSDL 538
G E++ + YY + I++F + + ++ + ++V EN I LCGNK D+
Sbjct: 66 AGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDV 125
Query: 539 E 541
+
Sbjct: 126 K 126
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.6 bits (123), Expect = 2e-08
Identities = 28/117 (23%), Positives = 55/117 (47%)
Frame = +2
Query: 185 LKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGG 364
+KV + G+ +GK+SL ++ +F S + TLG++ EK + + ++ +WD GG
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQ--TLGVNFMEKTISIRNTEITFSIWDLGG 68
Query: 365 MERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSD 535
++ A A + +F L S+ + + + + + + A L G K D
Sbjct: 69 QREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYD 125
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 45.2 bits (102), Expect = 8e-06
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHF--EKLYQVADKDVKLQLWDTG 361
K+++ G+ G GK+ L F + TF +R +++ + Y K ++L LWDT
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTF---PERYVPTVFENYITDITYGPNSKVIELALWDTA 72
Query: 362 GMERIASVTSSYYKFAEAAILVFSLD-NASSFHILSQHLLEIVSYAENAKIFLCGNKSDL 538
G E + Y + +L FS+D AS ++ + E+ + I L G K+DL
Sbjct: 73 GQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADL 132
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.0 bits (99), Expect = 2e-05
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +2
Query: 161 MAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVK 340
MA +K+ + V+ G VGKSSL +++ N FV T+ + F K + ++
Sbjct: 1 MAPIKSRRIAVL--GSRSVGKSSLTVQYVENHFV--ESYYPTIE-NTFSKNIKYKGQEFA 55
Query: 341 LQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSY--AENAKIF 514
++ DT G + + + S + +LV+S+ + SSF ++ +I+++ E I
Sbjct: 56 TEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIV 115
Query: 515 LCGNKSDL 538
+ GNKSDL
Sbjct: 116 VVGNKSDL 123
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +2
Query: 320 VADKDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHI--LSQHLLEIVSY 493
V K++K +WD GG ++I + Y+ + L+F +D+A S I Q L I+S
Sbjct: 60 VTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKG--LIFVVDSADSNRISEARQELHRIISD 117
Query: 494 AE--NAKIFLCGNKSDLEGA-SP-QVTD 565
E + + + NK DL GA SP Q+TD
Sbjct: 118 REMRDCLLLVLANKQDLPGALSPAQITD 145
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 38.3 bits (85), Expect = 0.001
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Frame = +2
Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRR--ATLGLDHFEKLYQVADKDVKLQLWDTG 361
KV+L G G GKSS+ R + + +V RR AT+ ++H + ++ L LWD G
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFL---GNLVLNLWDCG 59
Query: 362 GMERIASVTSSYYK---FAEAAILVFSLD-NASSFH---ILSQHLLE-IVSYAENAKIFL 517
G E S + F +L++ D + F + ++ LE V+ + A++F
Sbjct: 60 GQEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFC 119
Query: 518 CGNKSDL 538
+K DL
Sbjct: 120 LIHKMDL 126
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 38.3 bits (85), Expect = 0.001
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +2
Query: 185 LKVILCGEYGVGKSSLFRRFI---NNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWD 355
++V++CG+ GVGKSSL I N T +P ++ + ++ DV L L D
Sbjct: 4 VRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSN------PDSNDDVSLVLVD 57
Query: 356 TGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSD 535
T ++ K A LV+S DN S + L S N I LC NKS+
Sbjct: 58 TQSDSNEREYLAAEIKKANVICLVYS-DNYSYERVSIFWLPYFRSLGVNVPIVLCENKSE 116
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 33.9 bits (74), Expect = 0.020
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = +2
Query: 170 VKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQL 349
+K ++V+L G GK+++ + +N ++ T G ++ + + ++ +
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDV---NEVSPTFGF----QIRTLEVEGLRFTI 64
Query: 350 WDTGGMERIASVTSSYYKFAEAAI-LVFSLDN--ASSFHILSQHLLEIVSYAENAKIFLC 520
WD GG + + + +Y++ EA I +V SLD+ Q LL + I +
Sbjct: 65 WDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELL-VEEKLLFTSILVL 123
Query: 521 GNKSDLEGA 547
NKSD+ GA
Sbjct: 124 ANKSDVSGA 132
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 33.1 bits (72), Expect = 0.035
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +2
Query: 329 KDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAE--N 502
+++ +WD GG ++I + Y++ + I V ++ + L +++ E +
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRD 118
Query: 503 AKIFLCGNKSDLEGA--SPQVTD 565
A + + NK DL A + ++TD
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITD 141
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.25
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Frame = +2
Query: 149 KRQNMAVVKTPVLKVILCGEYGVGKSSLFRRFINNTFVPNSD---RRATLGLDHFE--KL 313
KR+N+ K L ++LCG G GK++ F + P + T+ E K
Sbjct: 19 KRENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKN 78
Query: 314 YQVADKD---VKLQLWDTGGMERIASVTSSYYKFAE 412
V ++D + L + DT G TS + AE
Sbjct: 79 KAVIEEDGFHINLTVLDTPGFGDFIDNTSCWNTVAE 114
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 473 NVDSKYETM-KHCPVKRPKLQLQQIYNSLMSPKLFFPYLQYP 351
N+D YE M + +KRPK + QQIY L+ P + F Q P
Sbjct: 96 NIDFFYEIMLRQVLLKRPKEESQQIY--LLRPAMVFFLAQAP 135
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 182 VLKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLD 298
V ++++CG G GKSS F R+I N + A L LD
Sbjct: 331 VPRLMVCGPKGSGKSS-FSRYITNRLLQQYRHIAYLDLD 368
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 307 EVVPSCGQRCQVAVMGYWRYGKNSFGDIKLL*IC*SCNFGLFTGQCFIVSYFES 468
++VP CG+ C + + GY +N F D G+ + F++ Y ES
Sbjct: 1058 KIVPKCGKNCYLHLHGYTE--RNQFSDPTSTNAAVGLIIGVGSFSPFLIPYEES 1109
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +2
Query: 275 RRATLGLDHFEKLYQVADKDVKLQLWDTGGMERIASVTSSYYKFAEAAILVFSLDNASSF 454
R+ T+ D+ EK + + VK L D G R +V S E L+F L N S+
Sbjct: 5 RKQTIKNDYNEK---ITKRKVKNNLTD--GKARALTVFESLP--LEVLRLIFLLSNNSNL 57
Query: 455 HILSQHLLEIVSYAENAKIFL 517
+ S+ L +S N IF+
Sbjct: 58 AVTSRSLRHRLSLRNNTPIFM 78
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 521 HIKISLRFLHKIQFQVNVDSKYETMKH---CPVKRPKLQLQQIYNSLMSPKLFFPYLQ 357
H++ + +++I + +D+ + K+ C + KL+L Q ++ PK PY Q
Sbjct: 897 HMEFVNQVINEIDRYMRIDACMPSFKNIITCKSLKAKLRLAQTFHLEFGPKELLPYTQ 954
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 225 LFPTPYSPHKITFNTGVFTTAIFCLFFTINYF 130
LFP+ +P+K+ N + F +FF + Y+
Sbjct: 468 LFPSYQNPNKVEMNWAIVVLG-FTVFFCVGYY 498
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 221 KSSLFRRFINNTFVPNSDRRATLGLDHFEK 310
K SL R IN F P S+++ L H++K
Sbjct: 98 KRSLERAGINIKFAPPSNKKRRLNRTHYDK 127
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 219 ERVHYFAGSLTIPLFQTLIE 278
ER+H+F + IP FQ +++
Sbjct: 139 ERIHFFIVDVLIPFFQRVVQ 158
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 197 LCGEYGVGKSSLFRRFIN 250
LCG G GKS+L R +N
Sbjct: 465 LCGPNGSGKSTLMRAIVN 482
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 200 TKLLSIQEFLQQPYFVSFLLLIISVARH*LRNTFYKYHN 84
TKLL I + + V L+ ++ +R+ +R ++HN
Sbjct: 382 TKLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQEHHN 420
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 280 GDFRFRSFREVVPSCGQRCQVAVM 351
GD + + FR+ + S G CQ A++
Sbjct: 287 GDVQDKVFRQAITSAGSGCQAALL 310
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 362 GMERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAENAKIFLCGNKSDLE 541
G R Y K A+ FSL++AS F + I E +C N S E
Sbjct: 80 GQTRAVQSRGDYQKTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFNSSSPE 139
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.3
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -2
Query: 444 ALSSEKTKIAASANL**LDVTEAILSIPPVSHNCNLTSLSATWYNFSK*SKPKVALRSEF 265
A EKT A+S N L + I +P V HN +L + ++ S+ P L +E
Sbjct: 164 AAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLA--TCLLHSLSEPPTPASTLTAEA 221
Query: 264 GTKVLLMNLRNNELF 220
+ NL E F
Sbjct: 222 ALEDCESNLPLTETF 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,418
Number of Sequences: 5004
Number of extensions: 55425
Number of successful extensions: 192
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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