Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c17
         (646 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            82   1e-17
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    45   2e-06
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   1.6  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.7  
AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    23   6.3  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 82.2 bits (194), Expect = 1e-17
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = +2

Query: 188 KVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGGM 367
           K++L GE  VGKSSL  RF+   F  +  + +T+G     +   + D  VK ++WDT G 
Sbjct: 26  KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQ 83

Query: 368 ERIASVTSSYYKFAEAAILVFSLDNASSFHILSQHLLEIVSYAE-NAKIFLCGNKSDLEG 544
           ER  S+   YY+ A+AAI+V+ + N+ SF      + E+   A  N  I L GNK+DL  
Sbjct: 84  ERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADL-- 141

Query: 545 ASPQVTD 565
           A+ +V D
Sbjct: 142 ANSRVVD 148


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 45.2 bits (102), Expect = 2e-06
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
 Frame = +2

Query: 185 LKVILCGEYGVGKSSLFRRFINNTFVPNSDRRATLGLDHFEKLYQVADKDVKLQLWDTGG 364
           +K ++ G+  VGK+ +   +  ++F            D++     V    V L LWDT G
Sbjct: 7   IKCVVVGDGTVGKTCMLISYTTDSF---PGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAG 63

Query: 365 MERIASVTSSYYKFAEAAILVFSLDNASSF-HILSQHLLEIVSYAENAKIFLCGNKSDL 538
            E    +    Y   +  ++ +S+ + SSF ++ S+   EI  +  +A I L G K DL
Sbjct: 64  QEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKIDL 122


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 320 VADKDVKLQLWDTGGMERIASVTSSYYKFAE 412
           VADK     +W TG ++R+ S T   +  AE
Sbjct: 46  VADKTGNAAIWVTGTIQRVVSNTFEGFCIAE 76


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 518 CGNKSDLEGASPQVTDADIETFCEQCHNLV--NSTYKTSCKTGKG 646
           CG K+DL      +  AD    C++C +      +YK   KT +G
Sbjct: 307 CGRKTDLRIHVQNLHTADKPIKCKRCDSTFPDRYSYKMHAKTHEG 351


>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 295 RSFREVVPSCGQRCQVAVMGYWRYGKNSFGD 387
           +SF   +  C +  QV    Y  Y  NSF D
Sbjct: 39  KSFSRALQDCMEYLQVPGYRYAEYAANSFPD 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,475
Number of Sequences: 2352
Number of extensions: 12365
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)